Protein Alignment Clp and Zc3h4

DIOPT Version :10

• Sequence 1: NP_477156.1
• Gene: Clp / 33259
• FlyBaseID: FBgn0015621
• Length: 296
• Species: Drosophila melanogaster
• Sequence 2: NP_001414244.1
• Gene: Zc3h4 / 678741
• RGDID: 1596943
• Length: 1304
• Species: Rattus norvegicus
• Alignment Length: 279
• Identity: 58/279 - (20%)
• Similarity: 91/279 - (32%)
• Gaps: 106/279 - (37%)

  Fly    61 HIRGDR--TIVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDPQSK 122
            |.:.|:  .::||:::.|.|..||.|.|.|:.::.|..| |.||........:.||::|.|...|
  Rat   384 HQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGDFPCK 448

  Fly   123 VKDCPWYKRGFCRHGPHCRHQH----------LRRVLCMDYLAGF-------------------- 157
            :    ::..|.|.:|..|...|          |.::|..|..||.
  Rat   449 L----YHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKQGINPLPKP 509

  Fly   158 -----------------CPEGPSCKHMH----------------PHFELP---PLA--ELGKDQL 184
                             .|..|:.:.|.                |...:|   ||:  :|.:|..
  Rat   510 PPGVGLLPTPPRPPGPPAPTSPNGRPMQGGPPPPPPPPPPPPGPPQMAMPAHEPLSPQQLQQDMY 574

  Fly   185 HKKLPT-----CHYCGELGHKANSCKQYVGSLEHRNNINAMDHSGGHSG-----------GYSGH 233
            :||:|:     ....|:|..|..  .::.|             .||.||           |..|.
  Rat   575 NKKIPSLFEIVVRPTGQLAEKLG--VRFPG-------------PGGPSGPMGPGPNMGPPGPMGG 624

  Fly   234 SGHIEGADDMQSNHHSQPH 252
            ..|.:...||..:.|...|
  Rat   625 PMHPDMHPDMHPDMHPDMH 643

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Clp	NP_477156.1	YTH1	12..175	CDD:227416	36/182 (20%)
Zc3h4	NP_001414244.1	None