DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clp and zc3h4

DIOPT Version :10

Sequence 1:NP_477156.1 Gene:Clp / 33259 FlyBaseID:FBgn0015621 Length:296 Species:Drosophila melanogaster
Sequence 2:XP_005157662.1 Gene:zc3h4 / 557823 ZFINID:ZDB-GENE-100330-1 Length:1340 Species:Danio rerio


Alignment Length:243 Identity:58/243 - (23%)
Similarity:79/243 - (32%) Gaps:86/243 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 RNGQEC----DKGSACPFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFN 105
            ||.||.    .||.|            :||:::.|.|..||.|.|.|:.::.|..| |.||....
Zfish   352 RNDQEKHGPEKKGKA------------ICKYYIEGRCTWGDHCNFSHDIELPKKKELCKFYITGF 404

  Fly   106 ACHNKECPFLHIDPQSKVKDCPWYKRGFCRHGPHCRHQH----------LRRVLCMDYLAGFCPE 160
            ....:.||::|.|...|:    ::..|.|.:|..|...|          |.::|..|..||...|
Zfish   405 CARAENCPYMHGDFPCKL----FHTTGNCVNGEECMFSHDSLTEDTQELLDKMLAEDAEAGAEDE 465

  Fly   161 GPSCKHMHPHFELPPLAELGKDQLHKKLPTCHYCGELGHKANSCKQYVGSLEHRNNINAMDHSGG 225
            .          |:..|.:.|.:.|.|..|.                 ||.|......:..|.|  
Zfish   466 K----------EVEELKKQGINPLPKPPPG-----------------VGLLPTPPRPSPGDSS-- 501

  Fly   226 HSGGYSGHSGHIEGADDMQSNHHSQPH-----------GPGFVKVPTP 262
                           ..|:....|.||           |||...||.|
Zfish   502 ---------------TPMEFGMPSAPHGNIPPSGPPAPGPGVGPVPGP 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClpNP_477156.1 YTH1 12..175 CDD:227416 38/143 (27%)
zc3h4XP_005157662.1 zf-CCCH_4 367..387 CDD:465626 8/19 (42%)
ZnF_C3H1 393..417 CDD:214632 7/23 (30%)
PTZ00449 <789..1111 CDD:185628
Blue background indicates that the domain is not in the aligned region.

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