DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment Clp and Cpsf4l

DIOPT Version :9

Sequence 1:	NP_477156.1	Gene:	Clp / 33259	FlyBaseID:	FBgn0015621	Length:	296	Species:	Drosophila melanogaster
Sequence 2:	XP_038943379.1	Gene:	Cpsf4l / 287799	RGDID:	1306397	Length:	226	Species:	Rattus norvegicus

Alignment Length:	187	Identity:	93/187 - (49%)
Similarity:	130/187 - (69%)	Gaps:	12/187 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFRHIRGD 65
            |:.::|.:.|..|..|:|:..|.|...|||.|||||.:|||||..:.  .|.||..||.||.:|:
  Rat     1 MEEVIAGLQGFTFTFEQDVELQRGTGLLPFQGMDKSSSAVCNFFAKG--LCVKGMLCPLRHEQGE 63

  Fly    66 RTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPQSKVKDCPWYK 130
            :.:||||||||||:|.|.|.|||:||:::||.|||:|:|..|:||||||||:.|..|::|||||.
  Rat    64 KMVVCKHWLRGLCRKSDCCNFLHQYDVSRMPVCYFHSKFGNCNNKECPFLHLKPVPKLQDCPWYD 128

  Fly   131 RGFCRH-GPHCRHQHLRRVLCMDYLAGFCPEGPSCKHMHPHFELPPLAELGKDQLHK 186
            :|||:. ||.|:::|:.:|||.:|..||||:||.|:..||  ::.|:       ||:
  Rat   129 QGFCKEVGPLCKYRHVHQVLCPNYFIGFCPKGPKCQFGHP--KMSPI-------LHR 176

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Clp	NP_477156.1	YTH1	12..175	CDD:227416	87/163 (53%)
Clp	NP_477156.1	ZnF_C3H1	66..90	CDD:214632	16/23 (70%)
Cpsf4l	XP_038943379.1	YTH1	<36..196	CDD:227416	78/152 (51%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1472764at2759
OrthoFinder	1	1.000	-	-		FOG0002750
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR23102
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X2133
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	6.020