Protein Alignment Clp and Cpsf4l

DIOPT Version :10

• Sequence 1: NP_477156.1
• Gene: Clp / 33259
• FlyBaseID: FBgn0015621
• Length: 296
• Species: Drosophila melanogaster
• Sequence 2: XP_063126239.1
• Gene: Cpsf4l / 287799
• RGDID: 1306397
• Length: 226
• Species: Rattus norvegicus
• Alignment Length: 187
• Identity: 93/187 - (49%)
• Similarity: 130/187 - (69%)
• Gaps: 12/187 - (6%)

  Fly     1 MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFRHIRGD 65
            |:.::|.:.|..|..|:|:..|.|...|||.|||||.:|||||..:.  .|.||..||.||.:|:
  Rat     1 MEEVIAGLQGFTFTFEQDVELQRGTGLLPFQGMDKSSSAVCNFFAKG--LCVKGMLCPLRHEQGE 63

  Fly    66 RTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPQSKVKDCPWYK 130
            :.:||||||||||:|.|.|.|||:||:::||.|||:|:|..|:||||||||:.|..|::|||||.
  Rat    64 KMVVCKHWLRGLCRKSDCCNFLHQYDVSRMPVCYFHSKFGNCNNKECPFLHLKPVPKLQDCPWYD 128

  Fly   131 RGFCRH-GPHCRHQHLRRVLCMDYLAGFCPEGPSCKHMHPHFELPPLAELGKDQLHK 186
            :|||:. ||.|:::|:.:|||.:|..||||:||.|:..||  ::.|:       ||:
  Rat   129 QGFCKEVGPLCKYRHVHQVLCPNYFIGFCPKGPKCQFGHP--KMSPI-------LHR 176

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Clp	NP_477156.1	YTH1	12..175	CDD:227416	87/163 (53%)
Cpsf4l	XP_063126239.1	None