Protein Alignment Clp and Cpsf4l2

DIOPT Version :10

• Sequence 1: NP_477156.1
• Gene: Clp / 33259
• FlyBaseID: FBgn0015621
• Length: 296
• Species: Drosophila melanogaster
• Sequence 2: XP_002727980.1
• Gene: Cpsf4l2 / 100360200
• RGDID: 2322550
• Length: 243
• Species: Rattus norvegicus
• Alignment Length: 299
• Identity: 154/299 - (51%)
• Similarity: 185/299 - (61%)
• Gaps: 63/299 - (21%)

  Fly     1 MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFRHIRGD 65
            |..::|:|..::|.....:.:|:||.||||.|||||..|||.|..:  ..|.|...||||||.|:
  Rat     1 MQEIIASVDHIKFDLAIAVEQQLGAQPLPFPGMDKSGTAVCEFFLK--AACGKVHMCPFRHISGE 63

  Fly    66 RTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPQSKVKDCPWYK 130
            :|:||||||||||||||||||||||||||||||||||:|..|.|||||||||||:||:||||||.
  Rat    64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYD 128

  Fly   131 RGFCRHGPHCRHQHLRRVLCMDYLAGFCPEGPSCKHMHPHFEL-------PPLAELGKDQLHKKL 188
            ||||:|||.|||:..|||:|::||.||||||||||.|||.|||       |||.:      ..:.
  Rat   129 RGFCKHGPLCRHRRTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPPLPQ------QTQP 187

  Fly   189 PTCHYCGELGHKANSCKQYVGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQSNHHSQPHG 253
            ||           ....|.:|.::.:|:      |.|:.|
  Rat   188 PT-----------KRAPQVIGVMQSQNS------SAGNRG------------------------- 210

  Fly   254 PGFVKVPTPLEEITCYKCGNKGHYANKCPKGHLAFLSNQ 292
                  |.|||::||||||.||||||:|.||||||||.|
  Rat   211 ------PRPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 243

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Clp	NP_477156.1	YTH1	12..175	CDD:227416	114/169 (67%)
Cpsf4l2	XP_002727980.1	YTH1	<38..176	CDD:227416	101/139 (73%)
		COG5222	<192..>232	CDD:227547	22/76 (29%)