DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15880 and pgap-2

DIOPT Version :10

Sequence 1:NP_608547.2 Gene:CG15880 / 33257 FlyBaseID:FBgn0031283 Length:263 Species:Drosophila melanogaster
Sequence 2:NP_001369853.1 Gene:pgap-2 / 188041 WormBaseID:WBGene00007045 Length:263 Species:Caenorhabditis elegans


Alignment Length:248 Identity:58/248 - (23%)
Similarity:103/248 - (41%) Gaps:48/248 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 RHFRIPVGPILALGLLQLPVCMVYNLVMAITTDFQSTTYTTCNAFNIFPSTSAAAKS---QHKVW 84
            ::|.|.:|.:.:..||   :|::.:|::    .|...|.|.|...|..||.|||..:   :..:|
 Worm    14 KYFVICIGGLPSSALL---ICVILSLLL----HFDQATSTHCEVANWLPSISAAVSTYTPEKYIW 71

  Fly    85 ALACYLEF-PFLIASAWLQFR-FYRRNLRRPVRG-----FGCLMAIIMAVSSSSVLLWGTFPQED 142
            .:...|.. |.|:.:  :.|| |...:..||:.|     |.|.:|..:.:..:..||..|.....
 Worm    72 RILIGLHIGPRLVVA--IAFRNFLLGSPLRPLTGHKRLRFLCNLACFLNLLENFFLLALTSISSS 134

  Fly   143 GDSLLHITIALSLFVSCAIYMAGSFVCAKYYM--------------SDRIGQLHEEFSLRLKSGL 193
            .|..||        ..|   ..|..:|:..||              :..:||...|:.:...:..
 Worm   135 EDHSLH--------AKC---FGGFAICSIIYMLLSTWLFNETGRRTATNLGQRSHEYKILGAAIF 188

  Fly   194 VLTYYVWVVVMWIFYFIHQKFCFPLAYSVFGMGEFISCECFFIYLCTVYFDFY 246
            ||.:::...:.|    .|..:|.|..|::|.:.|:.:......:.||:|:||:
 Worm   189 VLCFFLGAYLYW----RHNTYCEPGIYTLFALVEYSAVLSNIFFHCTLYYDFH 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15880NP_608547.2 Frag1 29..248 CDD:431193 56/242 (23%)
pgap-2NP_001369853.1 Frag1 12..239 CDD:431193 58/248 (23%)

Return to query results.
Submit another query.