DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and GLR5

DIOPT Version :10

Sequence 1:NP_523447.2 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_565744.1 Gene:GLR5 / 817801 AraportID:AT2G32400 Length:921 Species:Arabidopsis thaliana


Alignment Length:422 Identity:86/422 - (20%)
Similarity:152/422 - (36%) Gaps:105/422 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 AATMAVEHI-----NRKRLLPGYTLELVTNDTQCDPGVGVDRFFHAIYTQPSTRMVMLLGSACSE 236
            ||.:|:|..     |.|..|....|.|:..|:.|:    |.|.....:......:|.::|...|.
plant    46 AAKVALEAAVSDVNNDKSFLKETELRLLMEDSACN----VFRGSFGAFELLEKEVVAMIGPISSS 106

  Fly   237 VTESLAKVVPYWNIVQVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWGTVTTFS 301
            |..:::.:....:...|||.:|.|.|| ..:||:|.||...|:....|.:..|..:||..|.:..
plant   107 VAHTISDIAKGLHFPLVSFAATDPTLS-ALQFPFFLRTTPNDAHQMSALVDLINFYGWKEVISVY 170

  Fly   302 QNEEVHSLAVNNLVTEL--EAANISCAATITFAATD--FKEQLLLLRETDTRIIIGSFSQELAPQ 362
            .::|:....|:.|..||  :.:.||....::..:.:  ....|...:....|:.|..|..:...:
plant   171 SDDELGRNGVSALDDELYKKRSRISYKVPLSVHSDEKFLTNALNKSKSIGPRVYILHFGPDPLLR 235

  Fly   363 ILCEAYRLRMFGADYAWILHESMGAPWWPDQRTACSNHELQLAVENLIVVSTHNSIVGNNVSYSG 427
            |...|.:|:|...:|.|:      |..|           |.:.:::|....|...:.|    ..|
plant   236 IFDIAQKLQMMTHEYVWL------ATDW-----------LSVTLDSLSDKGTLKRLEG----VVG 279

  Fly   428 LNNHM--------FNSQLRKQSAQFHGQDGFGSGYGSRISIAATQSDSRRRRRRGVGGTSGGHLF 484
            |..|:        |..:|:..                                            
plant   280 LRQHIPESVKMEHFTHKLQSN-------------------------------------------- 300

  Fly   485 PEAISQYAPQTYDAVWAIA------------LALRAAEEHWRRNEEQSKLDGFDYTRSDMAWEFL 537
             .:::.||...||.||.||            :....:|:.......:..|:...:..|...  .|
plant   301 -RSMNAYALHAYDTVWMIAHGIEELLNEGINITFSYSEKLLHARGTKLHLEKIKFFNSGEL--LL 362

  Fly   538 QQMGKLHFLGVSGPVSF-SGPDRVGTTAFYQI 568
            :::.|::|.|::|.|.| ||.:.:|..  |:|
plant   363 EKLLKVNFTGIAGQVQFGSGRNVIGCD--YEI 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_523447.2 PBP1_GABAb_receptor 156..600 CDD:380589 86/422 (20%)
7tmC_GABA-B-like 621..892 CDD:320175
TM helix 1 621..645 CDD:320175
TM helix 2 657..678 CDD:320175
TM helix 3 696..720 CDD:320175
TM helix 4 741..761 CDD:320175
TM helix 5 797..823 CDD:320175
TM helix 6 832..855 CDD:320175
TM helix 7 862..887 CDD:320175
GLR5NP_565744.1 PBP1_GABAb_receptor_plant 32..416 CDD:380645 86/422 (20%)
GluR_Plant 458..800 CDD:270404
Lig_chan 578..832 CDD:459656
Blue background indicates that the domain is not in the aligned region.

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