DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABA-B-R3 and olfcu1

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_001076368.1 Gene:olfcu1 / 794431 ZFINID:ZDB-GENE-050419-175 Length:868 Species:Danio rerio


Alignment Length:905 Identity:195/905 - (21%)
Similarity:324/905 - (35%) Gaps:250/905 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 GKIVLLGLFELSTSRGPRPD-GLSEL---------------GAATM--AVEHIN-RKRLLPG--- 193
            |.||:.|||.:. :..|..| ..|:|               ...||  |:|.|| ...||||   
Zfish    44 GDIVIGGLFPMH-NIAPETDYNFSDLPHYQDCSRFDFRAFRWVQTMVFAIEEINSNSSLLPGVAL 107

  Fly   194 -------------------YTLELVTNDTQCDPGVGVDRFFHAIYTQPSTRMVMLLGSACSEVTE 239
                               :.|......||.| .||.   .:.:.|.|   :..::|.|.|..|.
Zfish   108 GYRILDSCDHVHTSLRSALFLLNGTFGQTQTD-AVGT---ANCLSTAP---VPAVIGLASSSPTR 165

  Fly   240 SLAKVVPYWNIVQVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWGTVTTFSQNE 304
            ::|:.:..:.|..:|:.:|...|:|::|:|.|.|||..|.......:..:..|||..|.|...::
Zfish   166 AVAQTLGPFGIPLISYFATCTCLTDKKEYPSFLRTVPSDRFQVQGLVQLVSHFGWRWVGTVGTDD 230

  Fly   305 EVHSLAVNNLVTELEAANISCAA---TITFAATDFKEQLLL--LRETDTRIIIGSFSQELAPQIL 364
            :.....:.....:||... ||.|   ||..:.:..:.:.:|  |..:..::||...::....::|
Zfish   231 DYSHYGIQAFTEQLERLG-SCIAFHQTIPKSPSQAQIRSILNSLESSTAQVIIAFATEGELLELL 294

  Fly   365 CEAYRLRMFGADYAWILHESMGAPWWPDQRTACSNHELQLAVENLIVVSTHNSIVGNNVSYS--- 426
            .|..|..:  ....|:..|:     |             :..:.|.:...|..::| .|.:|   
Zfish   295 VEVARRNL--TRLQWVASEA-----W-------------VTAKLLTIPELHPVLIG-TVGFSFRG 338

  Fly   427 ----GLNNHMF--NSQLRKQSA--QFHGQDGFGSGYGSRISIAATQSDSRRRRRRGVGGTSGGHL 483
                ||...:|  ....|.:||  ....::.||...|...|     :||      .:...:|...
Zfish   339 TAIPGLAEFLFRVRPSSRPESAFTNMFWEELFGCRLGYEDS-----NDS------VLPLCTGSEN 392

  Fly   484 FPEAISQYAP--------QTYDAVWAIALALRAAEEHWRRNEEQSKLDGFDY---TRSDMA-WEF 536
            ..|..|.|..        ..|.||:|||.||.      :..:..||..|.|:   |.|..: .:.
Zfish   393 LLETESSYTDVSRVRISYNVYKAVYAIAHALH------QLLQCGSKEQGSDHSCNTESKFSPLQL 451

  Fly   537 LQQMGKLHFL--------------------------GVSGPVSFSGPDRVGTTAFY--------- 566
            |:.:.|:||.                          ...|.::|   ..|||   |         
Zfish   452 LRYLKKVHFTNQFNEKVYFDTNGEPVPLYDIINWQKNARGTINF---QLVGT---YDGSAPHGQQ 510

  Fly   567 -QIQRGLLE--------PVALYYP--------AT---------DALD------------FRCPRC 593
             :|:.||:.        ||:|..|        ||         |.|.            ..|.:|
Zfish   511 LKIEEGLIRWTGGQTKVPVSLCSPPCPPGTRQATRPGQPVCCFDCLPCAEGEISNISGATECLKC 575

  Fly   594 RPVKWHSGQVPIAKRVFKLRVATIAP----LAFYTI-----ATLSSVGIALAIAFLAFNLHFRKL 649
            ....|.:          |.||:.:|.    |:::.:     .:||..|:|:|...:.....||..
Zfish   576 PEYYWPN----------KERVSCVAGIEEFLSYHDVMGIILISLSLFGVAVATVVMVIFFIFRST 630

  Fly   650 KAIKLSSPKLSNITAVGCIFVY-ATVILLGLDHSTLPSAEDSFATVCTARVYLLSAGFSLAFGSM 713
            ..:|.::.::|.:..:.....: .:::.:|     .||     ...|.||.......|.|....:
Zfish   631 PIVKANNSEMSFLLLLSLKLCFLCSLVFVG-----RPS-----PLTCRARQAAFGISFVLCISCI 685

  Fly   714 FAKTYRVHRIFTRT--GSVFKDKMLQDIQLILLVGGLLLVDALLVTLWVVTDPMERHLHNLTLEI 776
            ..||..|...|..|  ||: ..|:....|..:.:........:|...|:...|...:.:.     
Zfish   686 LVKTIVVLLAFRSTVPGSI-SLKVFGPPQQRVFIFCCTTGQVILCACWLALAPPYPYKNT----- 744

  Fly   777 SATDRSVVYQPQVEVCRSQHTQTWLSVLYAYKGLLLVVGVYMAWETRHVKIP-ALNDSQYIGVSV 840
            |..|..::.:     |:......:..|| .|.|||..:...:|:..|  |:| ..|:::.|   .
Zfish   745 SYQDGRIILE-----CKDILPLGFYLVL-GYIGLLSCMCFVLAFLGR--KLPDTFNEAKLI---T 798

  Fly   841 YSVVITSAI---VVVLANLISERVTLAFITITALILTSTTATLCLLFIPKLHDIWARNDI 897
            :|::|..|:   .:...|....:.|:| :.|.| ||.||...|..:||||.:.|..|.|:
Zfish   799 FSMLIFCAVWISFIPAYNSSPGKYTVA-VEIFA-ILASTFGLLFSIFIPKCYVILLRPDL 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 120/574 (21%)
ANF_receptor 174..568 CDD:279440 103/497 (21%)
7tm_3 633..889 CDD:278433 58/262 (22%)
olfcu1NP_001076368.1 Periplasmic_Binding_Protein_Type_1 41..520 CDD:299141 115/528 (22%)
ANF_receptor 83..486 CDD:279440 96/448 (21%)
NCD3G 529..580 CDD:284890 9/50 (18%)
7tm_3 614..849 CDD:278433 58/263 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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