DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABA-B-R3 and LOC793043

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:XP_001332717.1 Gene:LOC793043 / 793043 -ID:- Length:852 Species:Danio rerio


Alignment Length:880 Identity:182/880 - (20%)
Similarity:298/880 - (33%) Gaps:215/880 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 GKIVLLGLF---------ELSTSRGPRPDGLSELG--------AATMAVEHINR-KRLLPGYTLE 197
            |.|::.|:|         :|:.|..|.|.....|.        :...|||.||. ..|:||.:|.
Zfish    40 GDIIIGGVFSFHSSWEIRQLTYSVTPPPLKCISLNYRDFQYVQSMLFAVEEINNSSTLIPGVSLG 104

  Fly   198 LVTNDTQCDPGVGVDRFFHAIYTQ--------PSTRMV---MLLGSACSEVTESLAKVVPYWNIV 251
            ....|| |.......|...|:...        |.|:..   .:||...|....::||.:..:|:.
Zfish   105 YRIYDT-CGSMAMAVRVTMALANAHENTTSDGPCTKQAYVQTILGDTTSSACMAMAKTIGPFNLP 168

  Fly   252 QVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWGTVTTFSQNEEVHSLAVNNLVT 316
            .:|..:|...|||:.::|.|.||:..|...:.|....:|.|||..|.....:::..:..:.....
Zfish   169 MISHYATCECLSDKVKYPSFLRTITSDYYQSRALAELVRHFGWTWVGAIRTDDDYGNNGMATFTK 233

  Fly   317 ELEAANISCAATITFAATDFKEQLLLLRE---TDTRIIIGSFSQELAPQILCEAY-RLRMFGADY 377
            ..|...|....::.|..|..:::::.:.|   :.|..:|.:|......::|...: ...:.|  |
Zfish   234 VAEQMGICLEYSVPFFRTYAEDKVIRIIEQIKSSTSRVIVAFLVHWDLEVLLHKFVEYNITG--Y 296

  Fly   378 AWILHESMGAPWWPDQ--RTACSNHELQLAVENLIVVSTHNSIVGNNVSYSGLNNHMFNSQLRKQ 440
            .|:..|.    |..|.  .|..::|.||.|| .|.:..|         ..:||..::.|.:..|.
Zfish   297 QWVGTEG----WISDSVIATMDTHHILQGAV-GLAIPKT---------EVTGLKEYILNIKQLKS 347

  Fly   441 SAQFHGQDGFGSGYGSRISIAATQSDSRRRRRRGVGGTSGGHLFPEAISQYA------------P 493
            |    |...|...:.|.........|.........|.        |.:||..            .
Zfish   348 S----GSTIFSELWESLYQCKYPNKDDSVSMNACTGN--------EELSQMQNSFTDMSLMPIFS 400

  Fly   494 QTYDAVWAIALALRAAEEHWRRNEEQSKLDGFDYTRSDMAWEFLQQMGKLHFLGVSG-PVSFSGP 557
            ..|..|:|:|..|........:...:.:||..         .||:.:.|:.|....| .|.|   
Zfish   401 NVYKGVYAVAHTLHELLGCKEKCASKKQLDPI---------TFLKHLRKVRFKTKDGEDVYF--- 453

  Fly   558 DRVG-TTAFYQI--------QRGLLEPVALY---YPATDAL------------------------ 586
            |..| ..|.|::        :......|.||   .|..|.|                        
Zfish   454 DENGEAVARYEVINWHPSNGKHDQFVTVGLYDASLPVKDRLAVNVASIVWSNNATKVPVSVCSES 518

  Fly   587 ---------------------------------DFRCPRCRPVKWHSGQ--VPIAKRVFKLRVAT 616
                                             ...|.||....|.:.|  |.:.|....|....
Zfish   519 CSPGTRKAVKKGKFICCYDCISCADGEISNTTDSVTCLRCHQELWSNLQKDVCVEKETEFLSFEE 583

  Fly   617 IAPLAFYTIATLSSVG--IALAIAFLAFNLHFRKLKAIKLSSPKLSNIT--AVGCIFVYATVILL 677
            |..:   .:.|:|.||  :.:.||.:.|  .::....:|.::.:||.:.  ::.|.|: .::..:
Zfish   584 IMGI---LLTTISIVGAFVTMIIAVIFF--RYKNTPIVKANNSELSFLLLFSLMCCFL-CSLTFI 642

  Fly   678 GLDHSTLPSAEDSFATVCTARVYLLSAGFSLAFGSMFAKTYRVHRIFTRT--GSVFKDKMLQDIQ 740
            |      ...|.|    |..|.......|.|....:..||..|...|..|  ||... |.....|
Zfish   643 G------QPTEWS----CMLRHTAFGITFVLCISCVLGKTIVVLMAFKATLPGSNVM-KWFGPPQ 696

  Fly   741 LILLVGGLLLVDALLVTLWVVTDP------MERHLHNLTLEISATDRSVVYQPQVEVCRSQHTQT 799
            ..|.|.|..|:..|:..||:...|      .......:.||                |....:..
Zfish   697 QRLSVLGFTLIQVLICVLWLTISPPFPFKNFNYFKEKIILE----------------CHVGSSIG 745

  Fly   800 WLSVLYAYKGLLLVVGVYMAWETRHVKIP-ALNDSQYIGVSVYSVVITSAIVV--VLANLISERV 861
            :.:|| .|.|.|.::...:|:..|  |:| ..|::::|   .:|::|..|:.:  :.|.:.|...
Zfish   746 FWAVL-GYIGCLALLCFILAFLAR--KLPDKFNEAKFI---TFSMLIFCAVWIGFIPAYVSSPGK 804

  Fly   862 TLAFITITALILTSTTATLCLLFIPKLHDIWARND 896
            ....:.|.| ||.|:...|..:|:||.:.|..:.|
Zfish   805 FTVAVEIFA-ILASSFGLLFCIFLPKCYVILFKPD 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 105/549 (19%)
ANF_receptor 174..568 CDD:279440 93/433 (21%)
7tm_3 633..889 CDD:278433 60/268 (22%)
LOC793043XP_001332717.1 PBP1_GPCR_family_C_like 43..487 CDD:153138 102/484 (21%)
ANF_receptor 82..469 CDD:279440 92/427 (22%)
NCD3G 512..563 CDD:284890 3/50 (6%)
7tm_3 597..832 CDD:278433 60/271 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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