DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and Vmn2r6

DIOPT Version :10

Sequence 1:NP_523447.2 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_001372142.1 Gene:Vmn2r6 / 667069 MGIID:3649068 Length:915 Species:Mus musculus


Alignment Length:905 Identity:174/905 - (19%)
Similarity:311/905 - (34%) Gaps:241/905 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 NHGKIVLLGLFELSTSRGPRPDGLSELGA--------------ATM--AVEHIN-RKRLLPGYTL 196
            || .:|:.|:|.:.....|..|...|:.:              .||  .::.|| ||.:||.:||
Mouse    51 NH-SVVIGGIFPVHYRTMPTSDSDEEIESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPNHTL 114

  Fly   197 --ELVTNDTQCDPGV--------GVDRFFHAIYTQPSTRMVMLLGSACSEVTESLAKVVPYWNIV 251
              ::..|.......:        |.|.:...........:|.::|:..|.::.:::::|...|:.
Mouse   115 GYQIFDNCFSTTKAMESSSVFLTGQDEYKSNWRNSTGKFLVGIIGAGGSTMSAAVSRIVGIHNVP 179

  Fly   252 QVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWGTVTTFSQNEEVHSLAVNNLVT 316
            ||.:.|:|...|:..:|||..||:..|...:.|.:..||.|||..|...:.:::.....|.....
Mouse   180 QVGYASSSSIFSNDIQFPYILRTIPSDKFQSEAIVNLIRHFGWVWVGAIASDDDYGKYGVRFFRE 244

  Fly   317 ELEAANISCAATITFAATDFKEQLLLL-----RETDTRIIIGSFSQELAP---QILCEAYRLRMF 373
            |:|.||:..|.:.|.......|::.:.     ..|...|::.:...:|.|   :::......|.:
Mouse   245 EMERANLCVAFSETIPKVYSNEKMKIAVDAVKSSTAKVIVLYATDIDLCPFVLEVIHHNITDRTW 309

  Fly   374 GADYAWILHESMGAP-------------------------------------------W------ 389
            .|..|||....:..|                                           |      
Mouse   310 IATEAWITSALIAKPEYFPYFGGTIGFAVPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNC 374

  Fly   390 -WPDQRTACS-NHELQL-AVENLIVVSTHNSIVGNNVSYSGLNNHMFNSQLR-----KQSAQF-- 444
             ||:.....: :|.:.: ..|:.:...:.....|........:.::..||||     :|:...  
Mouse   375 TWPNSTVPYNVDHRVNMTGKEDRLYDMSDQLCTGEEKLQDLKSTYLDTSQLRITNNVRQAVYLLA 439

  Fly   445 HGQDGFGSGYGSRISIAATQSDSRRRRRRGVGGTSGGHLFPEAISQYAPQTYDA-VWAIALALRA 508
            |..|.|            :|:|.|...|.            .|:.:..|..... :|.....::.
Mouse   440 HAIDRF------------SQADIREEYRE------------SAVLENKPDFESGKLWLYLTKIKF 480

  Fly   509 AEEHWRRNEEQSKLDGFDYTRSDMAWEFLQQMGKLHFLGVSGPVSFSG----------------- 556
            .....::.|..|..|..:.:...:.|. :...|::.|:.| |...|:.                 
Mouse   481 ITHDGKKIELGSNGDVLNGSYDILNWH-MDNTGEITFVKV-GEYKFTSSKYEFVLPKNSTLFWNT 543

  Fly   557 -----PDRV-------GTTAFYQIQRGLLEPVALY--YPATDAL------DFRCPRCRPVKWHSG 601
                 ||.|       ||..  .|.:|  :|:..:  .|.||..      ...|..|....|.:.
Mouse   544 ESSRLPDSVCTKVCPPGTRK--GIHQG--QPICCFDCIPCTDGYVSEKPGQRLCDPCGENDWSNA 604

  Fly   602 Q----VPIAKRVFKLRVATIAPLAFYTIATLSSVGIALAIAFLAFNLHFRKLKAIKLSSPKLSNI 662
            :    ||  |.|..|  |....|.| |:..||..|..:.:|.....:..|....:|.:..:||.:
Mouse   605 EKNKCVP--KHVEFL--AYEEALGF-TLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFL 664

  Fly   663 TAVGC-IFVYATVILLGLDHSTLPSAEDSFATVCTARVYLLSAGFSLAFGSMFAKT------YRV 720
            ..|.. |.|.::::.:|...:          ..|..|...|:.||.|...|:..||      ||:
Mouse   665 IQVSLGITVLSSMLFIGKPCN----------WSCKTRQVTLALGFCLCLSSILGKTVSLFFAYRI 719

  Fly   721 ----------HRIFTRTGSVFKDKMLQDIQLILLVGGLLLVDALLVTLWVVTDPMERHLHNLTLE 775
                      |.||.:.           |.||.:||     :..:.|.::|.:|     .:|...
Mouse   720 SISKTRLISMHPIFRKL-----------IVLICVVG-----EIGVCTTYLVLEP-----PSLFKN 763

  Fly   776 ISATDRSVVYQPQVEVCRSQHTQTWLSVLYAYKGLLLVVGVYMAWETRHVKIPALNDSQY----- 835
            |...:..::::     | ::.:..:|..::.:..||.::.....:..|.     |.|:.|     
Mouse   764 IEPQNVKIIFE-----C-NEGSIEFLCSIFGFDVLLALLCFVTTFVARQ-----LPDNYYEGKCI 817

  Fly   836 -IGVSVYSVVITSAIVVVLANLISERVTLAFITITALILTSTTATLCLLFIPKLHDIWAR 894
             .|:.|:.:|..|.:...|.......|.:....    ||.|:...|..:|:||...|..|
Mouse   818 TFGMLVFFIVWISFVPAYLGTKGKFNVAVEIFA----ILASSYGLLGCVFLPKCFIILLR 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_523447.2 PBP1_GABAb_receptor 156..600 CDD:380589 103/575 (18%)
7tmC_GABA-B-like 621..892 CDD:320175 59/293 (20%)
TM helix 1 621..645 CDD:320175 6/23 (26%)
TM helix 2 657..678 CDD:320175 5/21 (24%)
TM helix 3 696..720 CDD:320175 9/29 (31%)
TM helix 4 741..761 CDD:320175 5/19 (26%)
TM helix 5 797..823 CDD:320175 3/25 (12%)
TM helix 6 832..855 CDD:320175 7/28 (25%)
TM helix 7 862..887 CDD:320175 5/24 (21%)
Vmn2r6NP_001372142.1 Periplasmic_Binding_Protein_type1 55..541 CDD:471960 90/511 (18%)
NCD3G 549..602 CDD:462210 13/56 (23%)
7tmC_V2R-like 622..874 CDD:320407 62/299 (21%)
TM helix 1 622..647 CDD:320407 7/25 (28%)
TM helix 2 659..680 CDD:320407 5/20 (25%)
TM helix 3 689..713 CDD:320407 8/23 (35%)
TM helix 4 736..752 CDD:320407 6/31 (19%)
TM helix 5 779..805 CDD:320407 3/25 (12%)
TM helix 6 813..836 CDD:320407 4/22 (18%)
TM helix 7 841..866 CDD:320407 6/28 (21%)

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