DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and Vmn2r87

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_001096836.1 Gene:Vmn2r87 / 625131 MGIID:3645796 Length:848 Species:Mus musculus


Alignment Length:875 Identity:162/875 - (18%)
Similarity:278/875 - (31%) Gaps:282/875 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 AVEHINRK-RLLPGYTLELVTNDTQCDPGVGV---------DRFFHAIYT--QPSTRMVMLLGSA 233
            |.:.||:. .|||..:|.......:|...:|:         |...:..|.  ...|.::.|.|.:
Mouse    84 ATDEINKNPDLLPNTSLVFSVIGGKCQDSLGLLGEEYILINDSLNYVNYVCKADDTCVIDLTGPS 148

  Fly   234 CSEVTESLAKVVPYWNIVQVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWG--- 295
            ..   .||...:..|. .:|.||..:|.|||...|||.::....|:..:...::.:..|.|.   
Mouse   149 WK---TSLKLAIDSWT-PKVFFGPFNPNLSDHDRFPYVHQVATKDTHLSHGMVSLMLHFRWTWIG 209

  Fly   296 -TVTTFSQNEEVHS------------LAVNNLVTELEAANISCAATITFAATDFKEQLLLLRETD 347
             .::...|..::||            ||..|::.|        ...|.....:..::.::.....
Mouse   210 LVISDDDQGIQLHSDLREESQRHGICLAFVNVIPE--------TMKIYMTRGNMYDKQIMTSSAK 266

  Fly   348 TRIIIGSFSQELAPQILCEAYRLRMFGADYAWILHESMGAPWWPDQRTACSNHELQLAVENLIVV 412
            ..||.|..:..|........|    .||...||....     | |..|...:..|.| ....:..
Mouse   267 VVIIYGEMNSTLEISFRRWVY----LGARRIWITTSQ-----W-DVITNKKDFSLDL-FHGTVTF 320

  Fly   413 STHNSIVGN---------------NVSYSGLNNHMFNSQLRKQSAQFHGQDGFGSGYGSRISIAA 462
            :.|...:..               |:|.|.|..:.||..:.|.|.:   .|.|..          
Mouse   321 AHHKGWIAKFKNFMQTMNTSKYPINISQSVLRWNYFNCSVSKNSIK---MDHFTC---------- 372

  Fly   463 TQSDSRRRRRRGVGGTSGGHLFPEAISQYAPQTYDAVWAIALALRAAEEHWRRNEEQSKL--DGF 525
                     :..:..|: .|.:..|:|......|:||:|:|   .|..||.....|..|:  |..
Mouse   373 ---------KNPLEWTA-LHNYDMALSDEGYNLYNAVYAVA---HAYHEHILHQVESQKMAEDKG 424

  Fly   526 DYTRSDMAWEFLQQMGKLHFLGVSGPVSFSGP--------DRVGTTAFYQI--------QRGLLE 574
            .||.       .||:..|....|     |:.|        .|....|.|.|        ..||..
Mouse   425 KYTE-------CQQLAPLLKTRV-----FTNPVGELVNMNQREYQCAEYDIFIIWNFPQGLGLKV 477

  Fly   575 PVALYYPATDALDFRC-PRCR------PVKWHSGQ------------VPIAKRVFKLRVA----- 615
            .:..|:|        | ||.:      .::|.:|.            .|..:::.:...|     
Mouse   478 KIGNYFP--------CFPRSQQLHISEDLEWVTGGTLVPSSMCSVTCTPGFRKIHQKETADCCFD 534

  Fly   616 --------------------------------------TIAPLAF-----YTIATLSSVGIALAI 637
                                                  |::.||:     ..:.:::....|:.|
Mouse   535 CVQCPENEVSNETADMEQCVRCPDDKYANLEQSHCLQRTVSFLAYEDPLGMVLGSMALSSSAITI 599

  Fly   638 AFLAFNLHFRKLKAIKLSSPKLSNITAVGCIFVYATVILLGLDHSTLPSAEDSFATVCTARVYLL 702
            ..|...:.::....:|.::..||.|..:..:|.:...:|. ::|..        ...|..:....
Mouse   600 LVLVTFMKYKDTPIVKANNCILSYILLISLVFCFLCSLLF-IEHPN--------QVTCILQQTTF 655

  Fly   703 SAGFSLAFGSMFAKTYRVHRIF--TRTGSVFKDKMLQDIQLILLVGGLLLVDALLVTLWVVTDPM 765
            ...|::|..::.|||..|...|  |..|...:..|....:|::.:  ..|:..:|..:|::|.| 
Mouse   656 GLFFTVAVSTVLAKTITVVMAFKLTTPGKRMRGMMTGAPKLVIPI--CTLIQLVLCGIWLLTSP- 717

  Fly   766 ERHLHNLTLEISATDRSVVYQPQVEVCRSQHTQTWLSVLYAYKGLLLVVGVYMAWETRHVKIPAL 830
                       ...||.:         :|:|.:|   |::..||.::...|.:.           
Mouse   718 -----------PFIDRDI---------QSEHGKT---VIFCNKGSVIAFHVVLG----------- 748

  Fly   831 NDSQYIGVSVYSVVITSAIVVVLANLISERVTLA-FITITAL----------------------- 871
                |:|    |:.:.|..|..||..:.:|...| |:|.:.|                       
Mouse   749 ----YLG----SLALGSFTVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTRGKIMVV 805

  Fly   872 -----ILTSTTATLCLLFIPKLHDIWARND 896
                 ||.|:...|..:|:||.:.|..|.|
Mouse   806 VEVFSILASSAGLLGCIFVPKCYVILVRPD 835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 94/469 (20%)
ANF_receptor 174..568 CDD:279440 89/439 (20%)
7tm_3 633..889 CDD:278433 55/286 (19%)
Vmn2r87NP_001096836.1 PBP1_Pheromone_receptor 40..500 CDD:107360 97/484 (20%)
NCD3G 509..561 CDD:284890 2/51 (4%)
7tm_3 596..829 CDD:278433 55/286 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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