DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABA-B-R3 and Vmn2r82

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_001095042.1 Gene:Vmn2r82 / 624845 MGIID:3646522 Length:865 Species:Mus musculus


Alignment Length:853 Identity:163/853 - (19%)
Similarity:295/853 - (34%) Gaps:222/853 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 AATMAVEHIN-RKRLLPGYTLELVTNDTQCDPGVGVDRFFHAIYTQPSTRMVMLLGSACSEVTES 240
            |...||..|| ...:||..:|.|...:.   |.:| ...|..:::..:....::....|.:.::|
Mouse    83 AMLFAVNEINLNSHILPNTSLGLEIYNL---PAIG-RNIFRTVFSWLTGLSSVIPNYTCRKESKS 143

  Fly   241 LAKVV--------PYWNIV------QVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRK 291
            .|.:.        ..|.|:      |::||...|...||.:|...|:....|::......:.:..
Mouse   144 AATLTGLSWKTSETIWTILDLYKFPQLTFGPFDPVQIDRNQFRSLYQVAPKDTALLSGIASLMLH 208

  Fly   292 FGWGTVTTFSQNEEVHSLAVNNLVTELEAANISCAATITFAATDFKEQLLLLRET---------- 346
            |.|..|......::..:..:::...||:...| |.|        |.:.:|.|.||          
Mouse   209 FNWNWVGLLIPADQRGAQFLSDFRKELDKTRI-CIA--------FVQTVLYLGETLLRLLSQDHI 264

  Fly   347 --------DTRIIIGSFSQELAPQILCEAYRLRMFGADYAWILHESMGAPWWPDQRTACSNHELQ 403
                    |..:|.|..|..|.   |.|: ..|.:.....|:    |...|:      |.|.||.
Mouse   265 HILESSTADVIVIYGPTSILLT---LIES-TYRKYNMKKIWV----MNTKWF------CPNIELY 315

  Fly   404 LAVE---NLIVVSTH-NSIVGNNVSYSGLNNHMFNSQLRKQSAQFHGQDGF------------GS 452
            ..:|   ..::.|.| ..|.|            |...:::.:...:.:|.|            ..
Mouse   316 NMLELSHGALIFSPHYEEIAG------------FKKFMQEATPIKYPEDIFLHILWYWYFKCSFL 368

  Fly   453 GYGSRISIAATQSDSRRRRRRGVGGTSGGHLFPEAISQYAPQTYDAVWAIALALRAAEEHWRRNE 517
            .:..:|.....|:.|..        ...|::|...:::.:...|:||:|:|.:|........:.:
Mouse   369 HFECKIFKNCLQNASLE--------LLPGNIFTMTMTEESYYVYNAVYAVAHSLHEETLSQIQYQ 425

  Fly   518 EQSKLDG--------------------------FDYTRS-----DMA--WEFLQQMGKLHFLGVS 549
            .||.:|.                          .|:.|.     |:.  |.|...:..|..:|..
Mouse   426 PQSNIDRTLLFPWQLHPFLKKIQVKNSVGDDVVLDWKRKADPEYDITNIWNFPTGLSLLVKVGTF 490

  Fly   550 GPVSFSGPD----------RVGTTAFYQIQRGL--------LEPVALYYPATDALDF-------- 588
            .|.:..|..          .:|   |.:|...:        ...|||....|...|.        
Mouse   491 VPSAPKGKQLSMSEYMINWPIG---FTEIPHSVCSESCNPGFRKVALESKPTCCFDCTPCPDNEI 552

  Fly   589 -------RCPRCRPVKWHSGQVPIAKRVFKLRVATIA---PLAFYTIATLSSVGIA--LAIAFLA 641
                   :|..|....:.|.:   .:...|..:..::   ||.  ...||.|:|.:  .|:....
Mouse   553 SNETGMDQCVHCPETHY
ASAE---KRHCLKKTITFLSYNDPLG--KGITLLSIGFSTLTALVIWV 612

  Fly   642 FNLHFRKLKAIKLSSPKLSNITAVGCIFVY-ATVILLGLDHSTLPSAEDSFATVCTARVYLLSAG 705
            |..| |....||.::..||.|..:..|..: ..::.:||.::          ..|..:.|:....
Mouse   613 FVEH-RGTPIIKANNRSLSYILLITLILCFLCPLLFIGLPNT----------ATCIMQQYMFGLL 666

  Fly   706 FSLAFGSMFAKTYRVHRIFTRTGSVFKDKMLQDIQL-ILLVGGLLLVDALLVTLWVVTDP----- 764
            |::|..::.|||..|...|..|....|.:.|...|: ..::...:|:..||..:|:.|.|     
Mouse   667 FTVALSTVLAKTITVVMAFKITAPGRKIRWLLTSQVPKFVIPVCILIQVLLSGIWLGTSPPFIDK 731

  Fly   765 --MERHLHNLTLEISATDRSVVYQPQVEVCRSQHTQTWLSVLYAYKGLLLVVGVYMAWETRHVKI 827
              ...|.|.:.|                 | |:.:..:.....||.|::......:|:.:|  ::
Mouse   732 DYQSEHGHIIIL-----------------C-SKGSYIYFYCTLAYLGVMAFGSYLLAFLSR--RL 776

  Fly   828 P-ALNDSQYIGVSVYSVVITSAIVVVL--ANLISERVTLAFITITALILTSTTATLCLLFIPKLH 889
            | ..|:|:.:..|:  :|..|..|:.|  .:..|.:|.:|....:  ||.|:.:.|.::|.||.:
Mouse   777 PDRFNESKSLAFSM--LVFCSVWVMFLPVCHSTSGKVMVAMEMFS--ILASSASILIIVFAPKCY 837

  Fly   890 DIWARNDI 897
            .:..|.::
Mouse   838 IVLFRPEL 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 93/527 (18%)
ANF_receptor 174..568 CDD:279440 87/482 (18%)
7tm_3 633..889 CDD:278433 59/269 (22%)
Vmn2r82NP_001095042.1 PBP1_Pheromone_receptor 38..509 CDD:107360 85/472 (18%)
ANF_receptor 79..474 CDD:279440 79/437 (18%)
NCD3G 518..569 CDD:284890 7/50 (14%)
7tm_3 605..838 CDD:278433 59/267 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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