DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and Vom2r80

DIOPT Version :10

Sequence 1:NP_523447.2 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_001104791.1 Gene:Vom2r80 / 502285 RGDID:1559687 Length:851 Species:Rattus norvegicus


Alignment Length:919 Identity:179/919 - (19%)
Similarity:304/919 - (33%) Gaps:282/919 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 MQRNHGKIVLLG-------LFELSTSRGP--RPDGLSELGAATMAVEH------------INRK- 188
            :::|.||    |       :|.:...:||  :.|....|...|:...|            |||. 
  Rat    29 IKQNRGK----GGNSETDCIFLILPVKGPVEKDDFKPLLNTQTLTENHKHALVLAFSVNEINRNP 89

  Fly   189 RLLPGYTLELVTNDTQCDPGVGVDRFFHAIY-------------TQPSTRMVMLLGSACSEVTES 240
            .|||  .:.|..:...|:   ...:|.:.||             .|.:...|:.|.......|..
  Rat    90 DLLP--NMSLTMDIPSCN---WTSKFRNTIYDSLHNYKILPNYSCQDNLLCVVALTGGNWATTLL 149

  Fly   241 LAKVVPYWNIVQ---VSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWGTV-TTFS 301
            |..|:.|:...|   :::....|||.|...|||.|:..:.|:|...|.::||..|.|..: ...|
  Rat   150 LYTVLSYFIYQQFFLLTYRPFHPALHDHENFPYLYQMSSDDTSLALALVSFIIHFSWNWIGLAIS 214

  Fly   302 QNEE-VHSLAVNNLVTELEAANISCAATITFAATDFKEQL---------LLLRETDTRIIIGSFS 356
            .||: .|.|:.  |...:| .|..|.|.::....|....:         ::...|:..||.|...
  Rat   215 DNEQSTHFLSY--LKRGME-RNTVCFAFVSMIPVDMDLYMSRAEVYYNQIVTSSTNVVIIYGDTG 276

  Fly   357 QELAPQILCEAYRLRMFGADYAWILHESMGAP--W-----W---PDQRT------ACSNHELQL- 404
            ..||     .::|:        |   ||:|..  |     |   |.::.      |..:|..:: 
  Rat   277 GTLA-----VSFRM--------W---ESLGLQKLWITTTRWDVTPSKKDNLYGLFAFGHHHGEIP 325

  Fly   405 AVENLIVVSTHNSIVGNNVSYSGLNNHMFNSQLRKQSAQFHGQDGFGSGYGSRISIAATQSDSRR 469
            ..:|.  |.|.|.:..::.:.:.|....||.::                           |.|:.
  Rat   326 GFKNF--VQTLNPVTSSDENLAKLEWMYFNCEV---------------------------SASKC 361

  Fly   470 RRRRGVGGTSG-----GHLFPEAISQYAPQTYDAVWAIALALRAAEEHWRRNEEQSKLDGFDYTR 529
            :..:.......     .|.|....::.:...|:||:|.|............|...:|....:|..
  Rat   362 KALKNCSSNHSLEWLMAHTFEMTFTEGSYDIYNAVYAAAHVFHEINLQIFHNPPIAKGKVQNYVC 426

  Fly   530 SDMAWEFLQQMGKLHFLGVSGPVSFSGPDRVGTT----------AFY----------QIQRGLLE 574
            :.:.    ..:.|:||   :.||.    ||:...          .||          :::.||..
  Rat   427 NKLG----SSLRKIHF---TNPVG----DRINMNQRDKQQEIYDIFYIWNFPQGLEFKVKIGLFS 480

  Fly   575 PVALYYPATDALDFRCPRCRPVKWHSG--QVPIAK---------RVFK----------------- 611
            |   |:.....|......   ::|..|  |:|.:.         |.|:                 
  Rat   481 P---YFINGQQLHLSGDM---IEWARGSTQMPTSVCSSDCGPGFRKFRKKEMSACCFDCNPCPEN 539

  Fly   612 -------LRVATIAP----------------LAFYTIA-TLSSVGIALAIAFLAFN-------LH 645
                   :.:..:.|                |.|.|.. .|..|...:|:.|.||.       |.
  Rat   540 EISNETNVEMCILCPEDQYANTGQNHCIQKALIFLTYEDPLGRVLSLMALGFSAFTALVLGIFLK 604

  Fly   646 FRKLKAIKLSSPKLSNITAVGCIFVY-ATVILLGL-DHSTLPSAEDSFATVCTARVYLLSAGFSL 708
            ......:|.::..|:.|..:..||.: ..::.:|| |.:|....:.:|..|           |::
  Rat   605 HHHTPIVKANNSTLTYILLISLIFCFLCPLLFIGLPDLATCILQQITFGVV-----------FTV 658

  Fly   709 AFGSMFAKTYRVHRIFTRTGSVFKDKMLQDIQLILLVGGL--------LLVDALLVTLW------ 759
            |..::.|||..|...|..|..       |.:....||..:        .|::.|:..:|      
  Rat   659 AISTVLAKTITVILAFKVTAP-------QRMMKYFLVSRVPNYIIPICTLLELLVCAVWLGAFPP 716

  Fly   760 -VVTDPMERHLHNLTLEISATDRSVVYQPQVEVCRSQHTQTWLSVLYAYKGLLLVVGVYMAWETR 823
             |..|....|.|.:.                 :|.......:..|| .|...|..|...:|:.:|
  Rat   717 SVDIDDQSEHGHIII-----------------ICNKGSVTAFYCVL-GYLACLAFVSFTLAFLSR 763

  Fly   824 HVKIPA-LNDSQYIGVSVYSVVITSAIVVVLANLISERVTLAFITITALILTSTTATLCLLFIPK 887
            :  :|: .|:|:.|..|:  :|:.|..|..|....|.:..:........||.|::..|..:|:||
  Rat   764 N--LPSTFNESKSITFSM--LVVCSVWVTFLPVYHSTKGKVMVAVEIFSILASSSGMLLCIFVPK 824

  Fly   888 LHDIWARND 896
            .:.|..|.|
  Rat   825 CYIILFRPD 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_523447.2 PBP1_GABAb_receptor 156..600 CDD:380589 103/534 (19%)
7tmC_GABA-B-like 621..892 CDD:320175 63/296 (21%)
TM helix 1 621..645 CDD:320175 8/31 (26%)
TM helix 2 657..678 CDD:320175 4/21 (19%)
TM helix 3 696..720 CDD:320175 5/23 (22%)
TM helix 4 741..761 CDD:320175 5/34 (15%)
TM helix 5 797..823 CDD:320175 6/25 (24%)
TM helix 6 832..855 CDD:320175 7/22 (32%)
TM helix 7 862..887 CDD:320175 5/24 (21%)
Vom2r80NP_001104791.1 PBP1_pheromone_receptor 40..498 CDD:380588 101/527 (19%)
NCD3G 506..559 CDD:462210 4/52 (8%)
7tmC_V2R_pheromone 579..830 CDD:320410 62/290 (21%)
TM helix 1 579..604 CDD:320410 6/24 (25%)
TM helix 2 616..637 CDD:320410 4/20 (20%)
TM helix 3 646..670 CDD:320410 7/34 (21%)
TM helix 4 694..710 CDD:320410 2/15 (13%)
TM helix 5 737..763 CDD:320410 6/26 (23%)
TM helix 6 771..794 CDD:320410 7/24 (29%)
TM helix 7 799..824 CDD:320410 5/24 (21%)

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