DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and Vom2r68

DIOPT Version :10

Sequence 1:NP_523447.2 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:XP_017454827.1 Gene:Vom2r68 / 501881 RGDID:1560816 Length:851 Species:Rattus norvegicus


Alignment Length:745 Identity:143/745 - (19%)
Similarity:250/745 - (33%) Gaps:173/745 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 QVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWGTVTTFSQNEEVHSLAVNNLVT 316
            :|.||..:|.||||.:|||..:....|:..:.|.|:.:..|.| |....:.:::...:...::..
  Rat   163 KVFFGPFNPNLSDRDQFPYVNQIARKDTFLSHAMISLMLFFEW-TWIGLAISDDDQGIQFLSVTR 226

  Fly   317 ELEAANISCAA---------TITFAATDFKEQLLLLRETDTRIIIGSFSQELAPQILCEAYRLRM 372
            |:...:..|:|         .|..|..:..::.::.......||.|..:..|....    .|...
  Rat   227 EVMQKHSICSAFVNVIPENMQIYMARANIYDKQIMTSSAKVVIIYGERNSTLEVSF----RRWEY 287

  Fly   373 FGADYAWILHESMGAPWWPDQRTACSNHELQLAVENLIVVSTHNSIVGN---------------N 422
            .||...||....     | |..|......|.. ....:..:.||..:..               :
  Rat   288 LGAQKIWITTSQ-----W-DVITNKRVFSLDF-FHGTVTFAYHNGRIPKFRNFMQTMNTSKYPVD 345

  Fly   423 VSYSGLNNHMFNSQLRKQSAQFHGQDGFGSGYGSRISIAATQSDSRRRRRRGVGGTSGGHLFPEA 487
            :|.:.|..:.||..:.|.|                      .|:......:........|.|...
  Rat   346 ISQTILEWNYFNCSIFKNS----------------------DSEMNHFTSKNTEEWLAQHKFDMV 388

  Fly   488 ISQYAPQTYDAVWAIA-----LALRAAE-----EHWRR--------------------------N 516
            :|:.....|:||:|:|     |.|:..|     .|..|                          |
  Rat   389 LSEEGYNLYNAVYAVAHTYHELILQEVESQKILRHKGRFINCQQVASLLKTRIFMNPVGELVNMN 453

  Fly   517 EEQSKLDGFDYTRSDMAWEFLQQMG------------------------KLHFLGVSGPVSFSGP 557
            :.:::...:|...   .|.|.|.:|                        |....|.|..|..|..
  Rat   454 QRENQCAEYDIFN---IWNFPQGLGLKVKIGSYFSCFPQSQQLQISEDLKWATGGTSPQVPTSMC 515

  Fly   558 DRVGTTAFYQIQRG---------LLEPVALYYPATDALDFRCPRCRPVKW-HSGQVPIAKRVFKL 612
            ....|..|.:|.:.         .|.|.......||.  .:|.||...|: :..|....:|    
  Rat   516 SVTCTAGFRKIHQNEAAHCCFDCALCPENEVSNDTDM--EQCVRCPDDKYANLEQTYCIQR---- 574

  Fly   613 RVATIA---PLAFYTIATLSSVGIALAIAFLAFNLHFRKLKAIKLSSPKLSNITAVGCIFVYATV 674
            .|:.:|   ||.. |:..::....||.|..|...:..:.:..:|.::..||.|..:..||.:...
  Rat   575 HVSFLAYEEPLGL-TLGCMALCFSALTILVLVTFVKHKNIPVVKANNCILSYILLISLIFCFLCS 638

  Fly   675 ILLGLDHSTLPSAEDSFATVCTARVYLLSAGFSLAFGSMFAKTYRVHRIF--TRTGSVFKDKMLQ 737
            :|. :.|..        .|.|..:.......|::|..::.|||..|...|  |..|...: ::|.
  Rat   639 LLF-IGHPK--------KTTCILQQITFGIFFTMAISTVLAKTITVVMAFKLTTPGRRMR-RILA 693

  Fly   738 DIQLILLVGGLLLVDALLVTLWVVTDP--MERHLHNLTLEISATDRSVVYQPQVEVCRSQHTQTW 800
            .....|::....|:..::...|:.|.|  ::|       :|.:....|:.     :|.......:
  Rat   694 SGAPNLIIPICTLIQLVICGTWLATSPPFIDR-------DIQSEHGKVII-----ICNKGSVTAF 746

  Fly   801 LSVLYAYKGLLLVVGVY-MAWETRHVKIPALNDSQYIGVSVYSVVITSAIVVVLANLISERVTLA 864
            ..||...:.|.|  |.: :|:..|::. ...|:::::..|:  :|..|..:..|....|.|..:.
  Rat   747 HFVLGYLRSLAL--GSFAVAFLARNLP-DRFNETKFLTFSM--LVFCSVWITFLPVYHSTRGKVM 806

  Fly   865 FITITALILTSTTATLCLLFIPKLHDIWAR 894
            .:.....||.|:...|..:||||.:.|..|
  Rat   807 VVVEVFSILASSAGLLGCVFIPKCYVILVR 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_523447.2 PBP1_GABAb_receptor 156..600 CDD:380589 79/441 (18%)
7tmC_GABA-B-like 621..892 CDD:320175 56/275 (20%)
TM helix 1 621..645 CDD:320175 5/23 (22%)
TM helix 2 657..678 CDD:320175 6/20 (30%)
TM helix 3 696..720 CDD:320175 5/23 (22%)
TM helix 4 741..761 CDD:320175 3/19 (16%)
TM helix 5 797..823 CDD:320175 6/26 (23%)
TM helix 6 832..855 CDD:320175 4/22 (18%)
TM helix 7 862..887 CDD:320175 6/24 (25%)
Vom2r68XP_017454827.1 PBP1_pheromone_receptor 44..498 CDD:380588 63/371 (17%)
NCD3G 511..564 CDD:462210 12/54 (22%)
7tmC_V2R_pheromone 584..835 CDD:320410 59/278 (21%)
TM helix 1 584..609 CDD:320410 7/25 (28%)
TM helix 2 621..642 CDD:320410 6/21 (29%)
TM helix 3 651..675 CDD:320410 5/23 (22%)
TM helix 4 699..715 CDD:320410 2/15 (13%)
TM helix 5 742..768 CDD:320410 6/27 (22%)
TM helix 6 776..799 CDD:320410 4/24 (17%)
TM helix 7 804..829 CDD:320410 6/24 (25%)

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