DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABA-B-R3 and Vmn2r102

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_001098034.1 Gene:Vmn2r102 / 224572 MGIID:3647786 Length:857 Species:Mus musculus


Alignment Length:851 Identity:163/851 - (19%)
Similarity:292/851 - (34%) Gaps:233/851 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 AATMAVEHINRK-RLLPGYTLELVTNDTQCDPGVGVDRFFHAIYTQPST---------------- 224
            |...|:|.|||. .|||..:|             |.| |::..:|:..|                
Mouse    84 ALQFAIEEINRNPNLLPNTSL-------------GFD-FYNVRFTEKYTLDNAFIWLTALVNRKY 134

  Fly   225 --------RMVMLLGSACSEVTES-LAKVVPYWNIVQVSFGSTSPALSDRREFPYFYRTVAPDSS 280
                    |......:..|.:|.: :..::..:...|::||...|.|||..::|..|:....|:|
Mouse   135 FPNYNCKKRNFTAALTGTSWITSAQIGTLLQLFKFPQITFGPYDPLLSDHGQYPSLYQMAPKDTS 199

  Fly   281 HNPARIAFIRKFGWGTVTTFSQNEEVHSLAVNNLVTELEAANISCA------ATITFAATDFKEQ 339
            .:.|.::.|..|.|..|.....::...:..|::...|:|...|..|      ||.|.....|.|.
Mouse   200 LSLAIVSLIAHFRWSWVGLILPDDHKGNKIVSDFREEMERKGICLAFVKMIPATWTSHFAKFWEH 264

  Fly   340 LLLLRETDTRIIIG----------SFSQELAPQILCEAYRLRMFGADYAWILHESMGAPWWPDQR 394
               :.||:..|:.|          :..|.|..|              ..||::            
Mouse   265 ---MDETNVTIVYGDVDSLEGVIRNIEQRLLTQ--------------NVWIMN------------ 300

  Fly   395 TACSNHELQLAVENLIVVSTHNSIVGNNVSYSGLNNHMFNSQLRKQSAQFHGQD----------- 448
              ..:|.:..| :..::.:.|.|::   ..:|...|..|...::..:.:.:.:|           
Mouse   301 --IEHHVIDRA-DYFMLDTFHGSLI---FKHSYRENFEFTKFIKTVNPKKYPEDIYLPKLWHLFF 359

  Fly   449 --GFGSGYGSRISIAATQSDSRRRRRRGVGGTSGGHLFPEAISQYAPQTYDAVWAIALAL---RA 508
              .|.....:.:....|.:......|         |:|..|:::.:...|:.|:|:|.:|   |.
Mouse   360 KCSFADINCNVLDNCQTNASLDVFPR---------HIFDVAMNEESSSIYNGVYAVAHSLHEMRL 415

  Fly   509 AEEH--------------WRRNE-----EQSKLDGFDYTRS-DMAWEFLQQMGKLHFLGVS---G 550
            .|..              |:.|.     |.......|:.:: |..::.|........||:.   |
Mouse   416 QELQMQPYENGKGIVFFPWQLNRFLKDTEVKDKRCLDWKQTIDTEYDILNLWNLPKGLGLKVKIG 480

  Fly   551 PVSFSGPDRVGTTAFYQIQRGLLEPVALYYP----------ATDALD--FR----------CPRC 593
            ..|.:.|         |.|:..|....:.:|          .:::.:  ||          |.:|
Mouse   481 SFSANAP---------QGQQLSLSEQMIQWPEIFSEIPQSVCSESCEPGFRKVTLEGKAICCYKC 536

  Fly   594 RP---------------VKWHSGQVPIAKR--VFKLRVATIA---PLAFYTIATLSSVGI---AL 635
            .|               ||...|.....:|  .|:..|..:|   ||..    .|:|:.:   :|
Mouse   537 TPCGDNEISNETDVYQCVKCPEGHFANTERNNCFQKSVIFLAYEDPLGM----ALASIALCLSSL 597

  Fly   636 AIAFLAFNLHFRKLKAIKLSSPKLSNITAVGCIFVYATVILLGLDHSTLPSAEDSFATVCTARVY 700
            .:..:...:..|....:|.::..||.|..:...|.:    |..|:....|:     ...|..:..
Mouse   598 TVFVIGIFVKHRDTPIVKANNRALSYILLLTLTFCF----LCSLNFIGQPN-----TATCILQQT 653

  Fly   701 LLSAGFSLAFGSMFAKTYRVHRIFTRTGSVFKDKMLQDIQLI----LLVGGLLLVDALLVTLWVV 761
            ..:..|::|..::.||...|...|..:   |..|:::.:.|.    .::....|:..|:..:|:.
Mouse   654 TFAVTFTMALATVLAKAITVVLAFKVS---FPGKIVRWLMLSRGPNYIIPICTLIQLLICGIWMA 715

  Fly   762 TDPMERHLHNLTLEISATDRSVVYQPQVEVCRSQHTQTWLSVLYAYKGLL--LVVGVY-MAWETR 823
            |.|          .....|....|...:.:|.......:.|||    |.|  |.:|.| ||:.:|
Mouse   716 TSP----------PFIDEDAHTEYGQIIILCNKGSAVAFHSVL----GYLCFLALGSYTMAFLSR 766

  Fly   824 HVKIPALNDSQYIGVSVYSVVITSAIVVVLANLISERVTLAFITITALILTSTTATLCLLFIPKL 888
            ::. ...|:|:|:..|:  :|.....|..|....|.:..:........||.|:||.|..:|.||.
Mouse   767 NLP-DTFNESKYLSFSM--LVFFCVWVTFLPVYHSTKGKIMVAMEVFSILASSTALLAFIFGPKC 828

  Fly   889 HDIWAR 894
            :.|..|
Mouse   829 YIILLR 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 91/515 (18%)
ANF_receptor 174..568 CDD:279440 85/471 (18%)
7tm_3 633..889 CDD:278433 56/265 (21%)
Vmn2r102NP_001098034.1 PBP1_Pheromone_receptor 39..501 CDD:107360 88/483 (18%)
ANF_receptor 83..446 CDD:279440 77/419 (18%)
NCD3G 510..560 CDD:284890 7/49 (14%)
7tm_3 597..830 CDD:278433 56/261 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.