DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and gcy-14

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_506660.2 Gene:gcy-14 / 191647 WormBaseID:WBGene00001540 Length:1111 Species:Caenorhabditis elegans


Alignment Length:592 Identity:109/592 - (18%)
Similarity:184/592 - (31%) Gaps:189/592 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 LFELSTSRGPRPDGLSELGAATM-AVEHINRKRLLPGYTLELVTNDTQCDPGVG----VDRFFHA 217
            ||...|:...|..|.....||.: |.:.|..:.||..|.........:|..|:.    |:...| 
 Worm    25 LFSKDTASVMRAVGYRTSAAAVLVARDRIRAEHLLDQYDFNFTVKFDECTEGLAGGKTVELINH- 88

  Fly   218 IYTQPSTRMVMLLGSACSEVTESLAKVVPYWNIVQVSFGSTSPA-LSDRREFPYFYRTVAPDSSH 281
                  ..:.:::|..|:....::|.:..|:|:....:|.|:.| :.:...:|... |::.| :|
 Worm    89 ------DNVDVIIGPTCNRAGIAVASLAAYYNVPVFQWGLTTAADIGNVSRYPTTV-TLSLD-TH 145

  Fly   282 NPAR--IAFIRKFGWGTVTTF-----------SQNEEVHSLAVNN-------------------- 313
            :.|.  ...:|:|.|......           |..:::..:.:.|                    
 Worm   146 SMALGVREVLRRFEWDEFVFIYSNDGDEEKCASMKDDLEKMGIENSDVTLAYMVQIQTVTLDALQ 210

  Fly   314 -LVTELEAAN---ISC-----------AATITFAATDFKEQLLLLRETDTRIII----------- 352
             .:||:....   |:|           .|:...|.....|.:.:..|..:|...           
 Worm   211 KALTEVSKRGRIIIACFANGRGFKKAFVASTVLAGMSTDEYMYMFAEPQSRGFYVDEINGGEHYS 275

  Fly   353 -----GSFSQELAPQILCEAYRLRMFGADYAWILHESMGAPWWPDQRTACSNHELQLAVENL--- 409
                 |:|...|.|:.:.:||...::..|       :||.|.......|  |...|| :..:   
 Worm   276 WDDTDGNFVTGLTPEQIRDAYGKVLYICD-------NMGLPTTITPEFA--NFSSQL-ISRMTEQ 330

  Fly   410 ---IVVSTHNSIVGNNVSYSG------------LNNHMFNSQLRK--QSAQFHGQD------GFG 451
               .|....||......:|:|            ||..:.....|.  ::..|...|      |.|
 Worm   331 PFNCVQDCSNSTYKVPATYAGQLFDAFYAYGVALNRSLTQDPTRANLKNGSFVLSDIGMSFQGVG 395

  Fly   452 SG------YGSRI------------------SIAATQSD--------------SRRRRRRGVGGT 478
            .|      .|:||                  |:....|:              |.|...|.:.|.
 Worm   396 GGTVTLDDTGTRIVQVYMFALNTSLLPYLAASLVINGSEVEYTPFYKSEADLWSVRPLARPICGF 460

  Fly   479 SGGHLFPEAISQYAPQTYDAVWAIALALRAA------EEHWRRNEEQSKLDGFDYTRSDMAWEF- 536
            ||....|:.:.:|...|..|...:.|||.|.      ....:|.|.:         |.|:.|:. 
 Worm   461 SGLECPPDFVKEYLVYTIIAAVIVVLALLAGCAGLLYTMQMKRKEME---------RQDLLWQVP 516

  Fly   537 ---LQQM-------GKLHFLGVSGP-----VSFSGPDRVGTTAFYQIQRGLL----EPVALYYPA 582
               |||:       ..:|.. .|||     ::...........||..|:.:|    ..:.|.:.|
 Worm   517 FIELQQVQSKSKAEASMHSF-ASGPSTSTKITVESRSETINFIFYYYQQDILAAMKHDLILQFDA 580

  Fly   583 TDALDFR 589
            ....:||
 Worm   581 EQKAEFR 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 109/592 (18%)
ANF_receptor 174..568 CDD:279440 98/549 (18%)
7tm_3 633..889 CDD:278433
gcy-14NP_506660.2 PBP1_NPR_GC_like 21..423 CDD:107347 73/416 (18%)
ANF_receptor 43..418 CDD:279440 68/393 (17%)
PKc_like 535..800 CDD:304357 11/54 (20%)
HNOBA <817..860 CDD:285003
CYCc 839..1031 CDD:214485
Guanylate_cyc 866..1053 CDD:278633
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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