DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and Npr3

DIOPT Version :10

Sequence 1:NP_523447.2 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_032754.2 Gene:Npr3 / 18162 MGIID:97373 Length:536 Species:Mus musculus


Alignment Length:568 Identity:107/568 - (18%)
Similarity:183/568 - (32%) Gaps:155/568 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 SERRMSPAEMQRNHGKIVLLGLFELSTSRGPRPDG-LSELGAATMAVEH---------INRKRLL 191
            |.||...|...:....:|||          ||.|. |..|.....|:|:         ..||.|.
Mouse    35 SRRRAREALAAQKIEVLVLL----------PRDDSYLFSLARVRPAIEYALRSVEGNGTGRKLLP 89

  Fly   192 PGYTLELVTNDTQCDPGVG-------VDRFFHAIYTQPSTRMVMLLGSACSEVTESLAKVVPYWN 249
            ||...::...|:.|    |       |||...|...:|.    ::||..|......:|::..:|:
Mouse    90 PGTRFQVAYEDSDC----GNRALFSLVDRVAAARGAKPD----LILGPVCEYAAAPVARLASHWD 146

  Fly   250 IVQVSFGSTSPALSDR-REFPYFYRTVAPDSSHNPARIAFIRKFGWGTVTTFSQNEEVHSLAVNN 313
            :..:|.|:.:.....: .|:.:..|.....:......:|..|...|........::::.    .|
Mouse   147 LPMLSAGALAAGFQHKDTEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLE----RN 207

  Fly   314 LVTELEAAN-ISCAATITFAATDFKE-------QLLLLRETDTRIIIGSFSQELAPQILCEAYRL 370
            ....||..: :.....:..:|.:|.|       .::...:...|::|...|.:...:|:...:|.
Mouse   208 CYFTLEGVHEVFQEEGLHTSAYNFDETKDLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRH 272

  Fly   371 RMFGADYAWILHE-----SMGAPWWPDQRTACSNHELQLAVENLIVVSTHNSI----------VG 420
            .|...|||:...|     |.|...|  :|....:.|.:.|..:|..|:...::          |.
Mouse   273 GMTSGDYAFFNIELFNSSSYGDGSW--RRGDKHDSEAKQAYSSLQTVTLLRTVKPEFEKFSMEVK 335

  Fly   421 NNVSYSGLNNHMFNSQLRKQSAQFHGQDGFGSGYGSRISIAATQSDSRRRRRRGVGGTSGGHLFP 485
            ::|...|||..                                                      
Mouse   336 SSVEKQGLNEE------------------------------------------------------ 346

  Fly   486 EAISQYAPQTYDAVWAIALALRAAEEHWRRNEEQSKLDGFDYTRSDMAWEFLQQMGKLHFLGVSG 550
            :.::.:....:||:....|||     |.......||.||         .:.:||.....|.|::|
Mouse   347 DYVNMFVEGFHDAILLYVLAL-----HEVLRAGYSKKDG---------GKIIQQTWNRTFEGIAG 397

  Fly   551 PVSF-SGPDRVG---TTAFYQIQRGLLEPVALYYPATDALDFRCPRCRPVKWHSGQVPIAKRVFK 611
            .||. :..||.|   ..|....:.|..|.:..|:........|    ..||:..|  |:..|:.:
Mouse   398 QVSIDANGDRYGDFSVVAMTDTEAGTQEVIGDYFGKEGRFQMR----SNVKYPWG--PLKLRLDE 456

  Fly   612 LRVAT------------IAPLAFYTIATLSSVGIALAIAFLAFNLHFR 647
            .|:..            :...|...|...:.:|..|.:||..|...:|
Mouse   457 TRIVEHTNSSPCKSSGGLEESAVTGIVVGALLGAGLLMAFYFFRKKYR 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_523447.2 PBP1_GABAb_receptor 156..600 CDD:380589 89/488 (18%)
7tmC_GABA-B-like 621..892 CDD:320175 8/27 (30%)
TM helix 1 621..645 CDD:320175 7/23 (30%)
TM helix 2 657..678 CDD:320175
TM helix 3 696..720 CDD:320175
TM helix 4 741..761 CDD:320175
TM helix 5 797..823 CDD:320175
TM helix 6 832..855 CDD:320175
TM helix 7 862..887 CDD:320175
Npr3NP_032754.2 PBP1_NPR_C 46..441 CDD:380609 89/490 (18%)
TM_EphA1 471..502 CDD:214014 7/30 (23%)
Blue background indicates that the domain is not in the aligned region.

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