DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and LOC108648105

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:XP_017951194.2 Gene:LOC108648105 / 108648105 -ID:- Length:780 Species:Xenopus tropicalis


Alignment Length:853 Identity:168/853 - (19%)
Similarity:299/853 - (35%) Gaps:209/853 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 ATMAVEHINRK-RLLPGYTL-----ELVTNDTQCDPGV-----GVDRFFHAIYTQPSTRMVMLLG 231
            :..||..||.. .|||..||     :...|:.|...|.     |.:...........::||.|:|
 Frog    13 SVFAVNEINENPELLPNITLGFRIYDSCFNEMQAVEGAMSMLSGTENAIPNYVCNKQSKMVGLIG 77

  Fly   232 SACSEVTESLAKVVPYWNIVQVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWGT 296
            ...|..:.::|.:|..:...|:|:||....|||:..:|.|.||:..|.......|..:..|.|..
 Frog    78 DLQSSCSLAVASIVGLYRFPQISYGSAFYELSDKIRYPSFLRTIMSDKVQPYYFIRLMIHFNWTW 142

  Fly   297 VTTFSQNEEVHSLAVNNLVTELEAANISCAATITFAATDFKEQLL-----LLRETDTRIIIGSFS 356
            :...:.:.:........:..::|||.|..|..:..:|...::|.|     :.|...|.:::....
 Frog   143 IGILAADNDFGLYDSELMRKDIEAAGICVAFFMRISAQHTRDQSLSILQVIKRSAATVVVLYCSM 207

  Fly   357 QELAPQILCEAYRLRMFGADYAWILHES-MGAP------WWPDQRTACSNHELQLAVENL----- 409
            .||.| .:..|....:.|.  .|....| |.:|      :|   |.......|.|.|..:     
 Frog   208 PELIP-FMKVANEENITGK--VWFASGSAMSSPIFSYKEFW---RILNGTIGLALPVATIPGFKN 266

  Fly   410 IVVSTHNSIVGNNVSYSGLNNHMFNSQLRKQSAQFH------GQDGFGSGYGSRISIAATQSDSR 468
            .:.|.|.|:..|:         ||....  ..:.||      .:             ..|.|:..
 Frog   267 FLYSIHPSLYPND---------MFMKPF--WESNFHCLWYSWNE-------------TETTSNVT 307

  Fly   469 RRRRRGVGGTSGGHLFPEAISQYAPQTYDAVWAIALALR--------------AAEEHWR----- 514
            .....|:........:.|..|.||...|:||:::|..:.              :..:.|:     
 Frog   308 TPYCTGLENLKALDDYHEKTSAYAILVYNAVYSLAYGINNMTSCRSNFPCFNISKLDPWKVLHYV 372

  Fly   515 ------RNEEQSKLDGFDY-----TRSDMAWEFLQQMGKLHF-------------LGVSGPVSFS 555
                  .|:|| :|...||     .:..:.|:.|.. |...:             |.:|....:|
 Frog   373 KNVKVEMNDEQ-ELAFDDYGDHPIRQVYVNWQALPN-GVTRYVNFANLIEDPEPHLVISNNTIWS 435

  Fly   556 GPDRVGTTAF--------YQ--IQRGLLEPVALY---YPATDALDFR-----CPRCRPVKW---- 598
            |..|....:.        |:  .|:|  :|...:   ..:.|.|..:     |.:|....|    
 Frog   436 GNYREAPKSICSESCPPGYRKAPQKG--QPACCFDCILCSEDELSNKTDSTSCMKCPEDMWANER 498

  Fly   599 HSGQVPIAKRVFKLRVATIAPLAFY-----TIATLSSVGIALAIAFLAFNLHFRKLKAIKLSSPK 658
            |.|          .|..|:..|:|.     |:|.||..|..|.::.|...|.......:|.::..
 Frog   499 HDG----------CRDKTLEFLSFEEILGGTLAALSITGSLLPLSILFIFLRNADTPVVKANNRN 553

  Fly   659 LSNITAVGCIFVY-ATVILLGLDHSTLPSAEDSFATVCTARVYLLSAGFSLAFGSMFAKTYRVHR 722
            ||....|...|.| ..::.:|          ......|..|.::....|.:....:..||..|..
 Frog   554 LSYTLLVSLFFCYLCALMFIG----------RPITITCILRQFIFGISFVMCISCVLGKTMMVVI 608

  Fly   723 IFTRTGSVFKDKMLQD-------------IQLILLVGGLLLVDALLVTLWVVTDPMERHLHNLTL 774
            .|..|......:|..:             ||:|:..|            |:...|..::..|   
 Frog   609 AFNLTQPRSSRRMWLNSRVTNTLVLVCTAIQVIICAG------------WLAHSPPFQYTDN--- 658

  Fly   775 EISATDRSVVYQPQVEVCRSQHTQTWLSVLYAYKGLLLVVGVYMAWETRHVKIP-ALNDSQYIGV 838
              .:...:::.:     | ::.:.|..|....|.|.|..:...:|:.:|  |:| :.|:::.|  
 Frog   659 --KSKAGTIIVE-----C-NKGSPTGYSCTMGYMGFLATLCFVVAYLSR--KLPGSFNEAKLI-- 711

  Fly   839 SVYSVVITSAIVV--VLANLISERVTLAFITITALILTSTTATLCLLFIPKLHDIWARNDIIDPV 901
             .:|::|..|:.:  :.|.|.:....:..:.:.| ||:|:...:..:|:||::.|     |:.|.
 Frog   712 -TFSMLIFGAVWISFIPAYLSTTGKYMVAVEVFA-ILSSSIGLVTCIFLPKVYII-----ILRPE 769

  Fly   902 IHSMGLKM 909
            ::.:|.|:
 Frog   770 MNKIGRKI 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 99/506 (20%)
ANF_receptor 174..568 CDD:279440 94/476 (20%)
7tm_3 633..889 CDD:278433 50/272 (18%)
LOC108648105XP_017951194.2 Periplasmic_Binding_Protein_type1 14..433 CDD:415822 90/450 (20%)
NCD3G 442..495 CDD:400103 8/54 (15%)
7tmC_V2R_pheromone 516..766 CDD:320410 56/293 (19%)
TM helix 1 516..540 CDD:320410 7/23 (30%)
TM helix 2 552..573 CDD:320410 5/20 (25%)
TM helix 3 582..604 CDD:320410 3/21 (14%)
TM helix 4 630..646 CDD:320410 4/27 (15%)
TM helix 5 673..696 CDD:320410 5/22 (23%)
TM helix 6 708..730 CDD:320410 5/24 (21%)
TM helix 7 735..760 CDD:320410 5/25 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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