DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and gpr156

DIOPT Version :10

Sequence 1:NP_523447.2 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:XP_005167483.1 Gene:gpr156 / 101885196 ZFINID:ZDB-GENE-060201-2 Length:800 Species:Danio rerio


Alignment Length:550 Identity:141/550 - (25%)
Similarity:232/550 - (42%) Gaps:130/550 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   530 SDMAWEFLQQMGKLHFLGVSGPVSFSGPDRVGTTAFYQIQRGLLEPVALYYPATDALDFRCPRCR 594
            |..||:.||::..|                  |.:...:|...|.|.                .|
Zfish    24 SQQAWDVLQRLCAL------------------TASSVDVQSRSLSPA----------------LR 54

  Fly   595 PVKWHSGQVPIAKRVFKLRVATIAPLAFYTIATLSSVGIALAIAFLAFNLHFRKLKAIKLSSPKL 659
            .|.|                            ||.|.||.||:.||.|.|.|:..:.:|:|||.|
Zfish    55 AVVW----------------------------TLLSCGILLALFFLIFTLRFKNNRIVKMSSPNL 91

  Fly   660 SNITAVGCIFVYATVILLGLDHSTLPSAEDSFATVCTARVYLLSAGFSLAFGSMFAKTYRVHRIF 724
            :.:|..|.:..|::..|..::..:|.|...:.| |..||::.|..|.||.||.:..||:|::|:|
Zfish    92 NVLTLCGSVLTYSSGFLFAIEEKSLLSGAGARA-VLQARMWTLCIGSSLVFGPILGKTWRLYRVF 155

  Fly   725 TRTGSVFKDK--MLQDIQLILLVGGLLLVDALLVTLWVVTDPMERHLHNLTLEISATDRSVVYQ- 786
            |:.   ..||  :::||||:.||..|:|||.:::|.|.:.|| .:...:::..:...|....|. 
Zfish   156 TQR---VPDKRVIIRDIQLMGLVALLVLVDIVVLTAWGLMDP-AKCSRSVSAMVKVIDLDSSYSL 216

  Fly   787 PQVEVCRSQHTQTWLSVLYAYKGLLLVVGVYMAWETRHVKIPALNDSQYIGVSVYSVVITSAIVV 851
            .|::.|.|.::..|:.::...||.||:.|.|:|..|.:|.:|.:|.|:.|..:|..|.::||:.|
Zfish   217 SQLDSCSSLYSHLWIILISVLKGSLLLYGTYLAGLTSNVSLPPVNQSKTIMGAVCLVTMSSAVAV 281

  Fly   852 VLANLISERVTLAFITITALILTSTTATLCLLFIPKL---------------------------- 888
            .::..:.....:.:..|:..|...|.|..||||:|:|                            
Zfish   282 PISLYLYSWPNVVYSVISGAIFICTMAINCLLFVPQLTQWRHFEEETNSHPSQMAKYFSSPSKTT 346

  Fly   889 HDIWARNDIIDPVIHSMGLKMECNTRRFVVDDRRELQYRVEVQNRVYKKEIQALDAEIRKLERLL 953
            :.:::.::|...:..:..:|...|.:..|:|   .||.:|   |....|.::.:.|     .:||
Zfish   347 NSMYSEDEIYYLLGENDSMKRLINEKNAVID---SLQEQV---NNAKDKLLKLMTA-----SQLL 400

  Fly   954 ESGLTTTSTTTSSSTSLLTGGGHLKPELTVTSGISQTPAASKNRTPSISGILPNLLLS----VLP 1014
            :.....:|.|..:|||..|         ||.|..|.|....:     .|.:.|..:||    |.|
Zfish   401 DEREMDSSNTNLNSTSTQT---------TVVSPDSPTLVLKQ-----YSEVAPTRVLSPPPYVPP 451

  Fly  1015 PVIPRASWPSAEYMQIPMRRSVTFASQPQL 1044
            |.||..:..:|...:.|   ..|..|.|.|
Zfish   452 PPIPIHTTSNATSPEGP---GATDESSPHL 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_523447.2 PBP1_GABAb_receptor 156..600 CDD:380589 13/69 (19%)
7tmC_GABA-B-like 621..892 CDD:320175 89/301 (30%)
TM helix 1 621..645 CDD:320175 10/23 (43%)
TM helix 2 657..678 CDD:320175 6/20 (30%)
TM helix 3 696..720 CDD:320175 10/23 (43%)
TM helix 4 741..761 CDD:320175 9/19 (47%)
TM helix 5 797..823 CDD:320175 8/25 (32%)
TM helix 6 832..855 CDD:320175 7/22 (32%)
TM helix 7 862..887 CDD:320175 8/24 (33%)
gpr156XP_005167483.1 7tmC_GPR156 52..323 CDD:320419 92/319 (29%)
TM helix 1 52..77 CDD:320419 13/68 (19%)
TM helix 2 89..110 CDD:320419 6/20 (30%)
TM helix 3 127..151 CDD:320419 10/23 (43%)
TM helix 4 171..191 CDD:320419 9/19 (47%)
TM helix 5 227..253 CDD:320419 8/25 (32%)
TM helix 6 262..285 CDD:320419 7/22 (32%)
TM helix 7 292..317 CDD:320419 8/24 (33%)

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