DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABA-B-R3 and LOC101734131

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:XP_004911570.2 Gene:LOC101734131 / 101734131 -ID:- Length:883 Species:Xenopus tropicalis


Alignment Length:861 Identity:168/861 - (19%)
Similarity:318/861 - (36%) Gaps:207/861 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 PDGLSELGAATMAVEHINRK-RLLPGYTLELVTNDTQCDPGVGVDRFFHAI---------YTQPS 223
            |:...:|....:|::.||:. .:|...||.....|:..||...|......:         |:...
 Frog    87 PEYYRQLVDLLIAIKQINQSPNILLNLTLGYHIYDSCGDPRKAVRSVLQILSGTREPVPNYSCVG 151

  Fly   224 TRMVM-LLGSACSEVTESLAKVVPYWNIVQVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIA 287
            .|.:. .:|...||.|.::|:::..:...|:|:|:|...||||..||||:||...|..|......
 Frog   152 KRNIAGFIGDLSSENTVAIAQILNLYGYSQISYGATDTELSDRVSFPYFFRTTQSDRGHYFVLSK 216

  Fly   288 FIRKFGWGTVTTFSQN----EEVHSLAVNNLVTELEAANISCAATITFAATDFKEQL-------L 341
            .::.|||..|.....:    |:.|.|..:.|..:....:.:...|...:.|:.:..:       .
 Frog   217 LLKYFGWTWVGIIRLDDYGGEKEHQLLKSILSNDGICIDFTIKITSFISRTELEANIPNLMVYKR 281

  Fly   342 LLRETDTRIII--GS-----------FSQELAPQILCEAYRL--RMFGADYA-WILHESMG---- 386
            ::.|:...:|:  ||           .|.....:.:..:|.|  .|...||| .|.:.|:|    
 Frog   282 IIEESTASVIVLCGSVPSGAVEEFIHLSDLFIKKTIIVSYNLASSMHFMDYAIEIFNGSLGITQM 346

  Fly   387 ---APWWPDQRTACSN-HELQLAVENLI--VVSTHNSIVGNNVSYSGLNNHMFNSQLRKQSAQ-- 443
               :|:.|:....... |..:...:.|:  :...::|.:..:.:.:.:...:::..|...|.:  
 Frog   347 LLSSPYSPENTQVLKEFHPSKYPKDKLLEDIWMQYHSCLSKDPAKNKVYEQLYSGSLYNCSGREL 411

  Fly   444 ----FHGQDGFGSGYGSRISIA---------------ATQSDSRRRRRRGVGGTSGGHLFPEAIS 489
                .|..:.|   |..|:.:|               |.::..:.:|.:........:|.....:
 Frog   412 ITNVRHFDNKF---YSPRVPLAVDIMARALHIMQISLANRTTEKAKREQNYRNQMHHYLKKVQYN 473

  Fly   490 QYAPQTYDAVWAIALALRAAEEHWRRNEEQSKLDGFDYTRSDMAWEFLQQMGKLH--FLGVSGPV 552
            .:.|:|.:...:.              ||    ||...|:..:.:...|...:::  ..||..| 
 Frog   474 FFDPKTMNRTLSF--------------EE----DGELITQYKIRYVTFQSYKQIYMQIFGVFTP- 519

  Fly   553 SFSGPD-------RVG-----------------TTAFYQIQRGLLEPVALYYPATDALDFRCPRC 593
             ::.||       ::|                 ...|.::.:          |.|.:..:.|..|
 Frog   520 -WAPPDKYLQFISKIGWKTKNNEVPKSQCTDNCLPGFRKVPK----------PGTHSCCYNCVPC 573

  Fly   594 R-----------------PVKWHSGQVPIAKRVFKLRVATIAPLAFYTIATLSSVGIALAIAF-- 639
            .                 .::|     |...|.  ..:|.:.....||...:|.:..|.:|.|  
 Frog   574 SNGEISNTSDSENCVYCPDMEW-----PNENRT--QCIAKVEEFLSYTNDIISIIFSAFSILFFL 631

  Fly   640 -----LAFNLHFRKLKAIKLSSPKLSNITAVGCIFVYATVIL-LG--LDHSTLPSAEDSFATVCT 696
                 |...:.:|....::.::..||.:..|.....:.:|.| ||  :|            ..|.
 Frog   632 ITMLILILFITYRDSPIVRANNRSLSFLLLVSIKLSFLSVFLFLGRPVD------------ITCM 684

  Fly   697 ARVYLLSAGFSLAFGSMFAKTYRVHRIF--TRTGSVFKD----KMLQDIQLILLVGGLLLVDALL 755
            .|:......||:|..|:.|||..|...|  |:.||.::.    |:...:  :|....:.::  :.
 Frog   685 LRIITFGITFSIAVSSLLAKTIMVCVAFKATKPGSSWRKWLGVKLSNSV--VLFCSSIQII--IC 745

  Fly   756 VTLWVVTDPMERHLHNLTLEISATDRSVVYQPQVEVCRSQHTQTWLSVLYAYKGLLLVVGVYMAW 820
            :|...::.|.:.      |:|..:..:::.|     |.......:.||: .|.|||..|...:|:
 Frog   746 MTWLAISPPFQE------LDIHTSPGTIIIQ-----CNEGSAIGFYSVI-GYMGLLAAVSFVLAF 798

  Fly   821 ETRHVKIP-ALNDSQYIGVSVY---SVVITSAIVVVLANLISERVTLAFITITALILTSTTATLC 881
            ..|  .:| :.|:::||..|:.   ||.||    ::.|.|.::......:.|.| ||||:...|.
 Frog   799 LAR--SLPDSFNEAKYITFSMLLFCSVWIT----MIPAYLSTKGKNTVCVEIFA-ILTSSAGLLA 856

  Fly   882 LLFIPKLHDIWARNDI 897
            .:|:||.:.|..|.|:
 Frog   857 CIFVPKCYVILIRPDL 872

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 91/515 (18%)
ANF_receptor 174..568 CDD:279440 88/488 (18%)
7tm_3 633..889 CDD:278433 65/275 (24%)
LOC101734131XP_004911570.2 Periplasmic_Binding_Protein_Type_1 53..535 CDD:299141 87/470 (19%)
ANF_receptor 96..473 CDD:279440 72/379 (19%)
NCD3G 545..595 CDD:284890 5/59 (8%)
7tm_3 630..865 CDD:278433 62/269 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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