DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABA-B-R3 and LOC100490505

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:XP_012811543.1 Gene:LOC100490505 / 100490505 -ID:- Length:878 Species:Xenopus tropicalis


Alignment Length:889 Identity:183/889 - (20%)
Similarity:314/889 - (35%) Gaps:276/889 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 PRPDGLSELGAATMAVEHINR-KRLLPGYTLELVTNDTQCDPGVGVDRFFHAI---------YTQ 221
            |.|:...:......|:|..|. ..|||..||....:|:..||...|......:         |:.
 Frog    81 PLPEYYRQFVDFHFAIEKSNNDPLLLPNLTLGYHISDSCGDPRKAVRSVLQILSGTREPVPNYSC 145

  Fly   222 PSTRMVM-LLGSACSEVTESLAKVVPYWNIVQVSFGSTSPALSDRREFPYFYRTVAPDSSHNPAR 285
            ...|.:. .:|...||.|..:|:::..:...|:|:|:|..:||||..||||:||:..|..|..:.
 Frog   146 VGKRNIAGFIGDLSSETTVPIAQILTLYGYSQISYGATDTSLSDRVTFPYFFRTLQSDHGHYFSL 210

  Fly   286 IAFIRKFG--W-GTVTT--FSQNEEV----HSLAVNNLVTELEAANISCAATITFAATDFKEQL- 340
            ...::.||  | |.:|:  .|..:|:    :.|:::.:..|. ...||.......|..:.:..| 
 Frog   211 SKLLKAFGGNWVGIITSDDISGEKELQILTNYLSIDGICVEF-TIKISDNMDDISAVGNIRHHLP 274

  Fly   341 --LLLRETDTRIIIGSFSQELAPQILCEAYRLRMFG--ADYAWILHESMGAPWWPDQRTACSNHE 401
              .:::::.|.::           |||....|.:.|  ..|..:|.|.:                
 Frog   275 YKNIIQKSTTNVV-----------ILCGKISLGVIGKLIIYTDVLSEKI---------------- 312

  Fly   402 LQLAVENLIVVSTHNSIVGNNVSYSGLNNHMFNSQLRKQSAQFHGQDGFGSGYGSRISIAATQSD 466
                   |:|..|..|           .||:.:..|.    .|....||       :..:|...|
 Frog   313 -------LVVSPTLTS-----------KNHIIDYSLE----IFSNILGF-------VQHSAYSVD 348

  Fly   467 SRRRRRRGVGGTSGGHLFPEAISQYAPQTY------DAVWAIALALRAAEEH------------- 512
            ||.              ....:..:.|.||      :.:|.:.....:.::|             
 Frog   349 SRE--------------ITHYLESFRPSTYPEDKLLEDIWLLYHLCLSKQQHKNYLYANLYKYEL 399

  Fly   513 -----WRRNEEQSKLDGFDYTRS-----DMAWEFLQQM------------------------GKL 543
                 .:|..:....|...|:.|     ||....:..|                        .||
 Frog   400 HNCTGQKRITDIRHFDSKLYSPSVALAVDMMSHAIHAMHISLAERPPENRKQMYKYQVNIYLNKL 464

  Fly   544 HFLGVSG-PVSFSGPDRVGTTAFYQIQRGLLEP---VALYYPAT----DALDFRCP-RCRPVKW- 598
            |:....| .|||.....:.|  :|.|...:|||   :::.|..|    |.||.:.. |...:.| 
 Frog   465 HYKTTGGTTVSFEKNGELVT--WYMIYNCILEPNNQISVNYLGTFQPRDPLDDKSMIRSHQIIWI 527

  Fly   599 -HSGQVPIA----------KRVFKLRVATIAPLAFYTIATLSSVGIALAI--------------- 637
             :..|:|.|          ::|.::|    |....|..|..|...|:.|.               
 Frog   528 SNKSQIPSAQCSASCLPGLRKVPRIR----AQPCCYDCAQCSEGDISNATDSENCYKCPDMEWPN 588

  Fly   638 -----------AFLAFNLHFRKLKAIKLSSPKLSNITAVGCIFV-YATVILLG------------ 678
                       .||:::.|            ::|.:.....:|: ..||:::|            
 Frog   589 EKRDQCILKSEDFLSYSNH------------EISMLFGSVSLFLSVLTVLIMGIFLKYRDTPIVR 641

  Fly   679 -----LDHSTLPSAEDSFATV-----------CTARVYLLSAGFSLAFGSMFAKTYRVHRIF--T 725
                 |....|.|.:.||.:|           |..|:......||:|..|:.|||..|...|  |
 Frog   642 ANNRSLSFLLLVSIKLSFLSVFLFLGRPVDITCMLRIITFGITFSIAVSSLLAKTIMVCVAFKAT 706

  Fly   726 RTGSVFKD----KMLQDIQLILLVGGLLLVDALLVTLWVVTDPMERHLHNLTLEISATDRSVVYQ 786
            :.||.::.    |:...:  :|....:.::  :.:|...::.|.:.      |:|..:..:::.|
 Frog   707 KPGSSWRKWLGVKLSNSV--VLFCSSIQII--ICMTWLAISPPFQE------LDIHTSPGTIIIQ 761

  Fly   787 PQVEVCRSQHTQTWLSVLYAYKGLLLVVGVYMAWETRHVKIP-ALNDSQYIGVSVY---SVVITS 847
                 |.......:.||: .|.|||..|...:|:..|  .:| :.|:::||..|:.   ||.|| 
 Frog   762 -----CNEGSAIGFYSVI-GYMGLLAAVSFVLAFLAR--SLPDSFNEAKYITFSMLLFCSVWIT- 817

  Fly   848 AIVVVLANLISERVTLAFITITALILTSTTATLCLLFIPKLHDI 891
               ::.|.|.::......:.|.| ||||:...|..:|:||.:.|
 Frog   818 ---MIPAYLSTKGKNTVCVEIFA-ILTSSAGLLACIFLPKCYII 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 103/508 (20%)
ANF_receptor 174..568 CDD:279440 92/472 (19%)
7tm_3 633..889 CDD:278433 68/320 (21%)
LOC100490505XP_012811543.1 Periplasmic_Binding_Protein_Type_1 49..526 CDD:299141 104/517 (20%)
ANF_receptor 94..483 CDD:279440 90/459 (20%)
NCD3G 535..586 CDD:284890 9/54 (17%)
7tm_3 622..856 CDD:278433 61/256 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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