DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABA-B-R3 and olfcg3

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_001103412.1 Gene:olfcg3 / 100004682 ZFINID:ZDB-GENE-060503-159 Length:837 Species:Danio rerio


Alignment Length:872 Identity:166/872 - (19%)
Similarity:306/872 - (35%) Gaps:260/872 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 AVEHINRK-RLLPGYTLELVTNDTQC-----------------DPGVGVDRF-----FHAIYTQP 222
            |:|.|||. :|||..::.....|| |                 :.|.| :|.     .|||    
Zfish    85 AIEEINRSVQLLPNISIGYRIYDT-CGSRQSTMSAIMGLMNGQEFGAG-ERCNGRSPIHAI---- 143

  Fly   223 STRMVMLLGSACSEVTESLAKVVPYWNIVQVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIA 287
                   :|.:.|..|..|::....:.|..:|..::...||:::::|.|:||:|.|...:.|...
Zfish   144 -------IGESESSATVILSRTTGPFKIPVISHSASCECLSNKKDYPSFFRTMASDYHQSRALAY 201

  Fly   288 FIRKFGWGTVTTFSQNEEVHSLAVNNLVTELEAANISCAATITFAATD---FKEQLLLLRETDTR 349
            .::..||..|...|.:.|..:..::..:...:...|.......|..|:   ..:.:.::::...:
Zfish   202 LVKDLGWSWVGAVSSDNEYGNYGMSIFLKIAQEVGICVEYYAKFYRTEAENLHKAVNMIKKGTAK 266

  Fly   350 IIIGSFSQE----LAPQILCEAYR-LRMFGADYAWILHESMGAPWWPDQRTACSNHELQLAVENL 409
            :|:...|..    |..|:..|... |:|.|.. :||..:|...|        .|.|.|:.::   
Zfish   267 VIVAFVSLPEMGILVDQLSIENITGLQMIGVK-SWITVKSFITP--------SSFHVLKGSL--- 319

  Fly   410 IVVSTHNSIVGNNVSYSGLNNHMFNSQLRKQSAQFHGQDGF----GSGYGSRISIAATQSDSRRR 470
                   .|....:|..|...:..|...:|         ||    .....||.:::.::.:.   
Zfish   320 -------GIAVKKISVEGFAEYAINEFWKK---------GFPCLKSEVNSSRYALSCSRYED--- 365

  Fly   471 RRRGVGGTSGGHLF---------PEAISQYAPQTYDAVWAIALALRA---AEEHWRRNEEQSKLD 523
                        ||         ||  .:||...|.||:|:|.:|.:   .:||          :
Zfish   366 ------------LFVLKSISEDVPE--QRYASYVYKAVYAVAHSLHSLFNCKEH----------E 406

  Fly   524 GFDYTRSDMAWEFLQQMGKLHFLGVSGP-VSFSGP--------------DRVGTTAFYQI----- 568
            |.:...:....:.::.:.|:.|...:|. |.|...              |..|:|.|..:     
Zfish   407 GCEKDLTIQPQQVVEALKKVKFTIKTGDHVWFDSTGAAVAQYDVVNLQLDSYGSTLFKSVGYYDA 471

  Fly   569 ----------------------------------------QRGLLEPVALY----------YPAT 583
                                                    |:|  .||..|          ...|
Zfish   472 SLPPEQQFVLNTTNIIWAGGEQKVRSVCSESCPPGTRKATQKG--RPVCCYDCIQCADGEISNET 534

  Fly   584 DALDFRCPRCRPVKWHSGQVPIAKRVFKLRVATIAPLAF-------YTIATLSSVGIALAIAFLA 641
            |:.:  |.:|....|.:.:.  :|.|.|:    :..|:|       ..|.:|..|.:.:.:.||.
Zfish   535 DSNN--CKQCPEEYW
PNTEK--SKCVLKI----VEFLSFTELMGIVLVIFSLFGVTLTVLVTFLF 591

  Fly   642 FNLHFRKLKAIKLSSPKLSNITAVGCIFVYATVILLGLDHSTLPSAEDSFATVCTARVYLLSAGF 706
            ::.  :....:|.::.:||.:    .:|......|..|.....|:...     |..|.......|
Zfish   592 YSK--KDTPIVKANNSELSFL----LLFSLTLCFLCSLTFIGRPTEWS-----CMLRHTTFGITF 645

  Fly   707 SLAFGSMFAKTYRVHRIFTRTGSVFKDKMLQ---DIQLILLVGGLLLVDALLVTLWVVTDPMERH 768
            .|....:..||..|...|..|  :..:.|::   .:|..|.|....|:..|:..:|         
Zfish   646 VLCISCILGKTIVVLMAFRAT--IPGNNMIKWFGPVQQRLSVLAFTLIQILICVVW--------- 699

  Fly   769 LHNLTLEISATDRSVVYQPQVEVCRSQHTQT---WLSVLYAYKGLLLVVGVYMAWETRHVKIP-A 829
               ||:......:::.|..:..:.......|   |  ::..|.|||.|:...:|:..|  .:| .
Zfish   700 ---LTISPPFPSKNIKYYKEKIILECSLGSTIGFW--IVLGYIGLLAVLCFILAFLAR--TLPDN 757

  Fly   830 LNDSQYIGVSVYSVVITSAI-VVVLANLISE--RVTLAFITITALILTSTTATLCLLFIPKLHDI 891
            .|::::|   .:|::|..|: :..:...:|.  ::|:| :.|.| ||.|:...|..:|.||.:.|
Zfish   758 FNEAKFI---TFSILIFCAVWITFIPAYVSSPGKLTVA-VEIFA-ILASSFGLLFCIFAPKCYII 817

  Fly   892 WARNDIIDPVIHSMGLKMECNTRRFVV 918
            .              .|.|.||::.::
Zfish   818 L--------------FKPEQNTKQHIM 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 95/525 (18%)
ANF_receptor 174..568 CDD:279440 88/448 (20%)
7tm_3 633..889 CDD:278433 55/265 (21%)
olfcg3NP_001103412.1 PBP1_GPCR_family_C_like 41..483 CDD:153138 88/465 (19%)
ANF_receptor 77..454 CDD:279440 84/436 (19%)
NCD3G 496..547 CDD:284890 9/54 (17%)
7tm_3 583..816 CDD:278433 55/266 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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