DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABA-B-R3 and olfcg2

DIOPT Version :9

Sequence 1:NP_001245826.1 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_001103759.1 Gene:olfcg2 / 100004628 ZFINID:ZDB-GENE-060503-253 Length:835 Species:Danio rerio


Alignment Length:868 Identity:178/868 - (20%)
Similarity:311/868 - (35%) Gaps:251/868 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 AVEHINR-KRLLPGYTLELVTNDTQCDPGVGVDRFFHAIYT----QPSTR------MVMLLGSAC 234
            |:|.||: |.|||...:.....|| |...:.......|:.:    :|..|      :..:||.:.
Zfish    82 AIEEINKSKSLLPNIYIGYRIYDT-CGSRLSTMSATMAVLSGQEFRPRDRCNDQPPLHAILGESE 145

  Fly   235 SEVTESLAKVVPYWNIVQVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWGTVTT 299
            |..|..|::....:.:..:|..:|...||:|:::|.|:||:|.|...:.|....::.|||..|..
Zfish   146 SSATVILSRTTGPFKVPVISPSATCECLSNRKDYPSFFRTIASDYHQSRALAYIVKHFGWTWVGA 210

  Fly   300 FSQNEEV--HSLAVNNLVTELEAANISCAATITFAATD---FKEQLLLLRETDTRIIIGSFSQEL 359
            .|.:.:.  :.:|:...:.:.|  .|....::.|..|:   .|:.:..:::...::|:       
Zfish   211 VSSDNDYGNNGMAIFQKIAQEE--GICVEYSVKFYRTESDKLKKVVNEIKKGTAKVIV------- 266

  Fly   360 APQILCEAYRLRMFGADYAWILHESMGAPWWPDQRTACSNHEL--QLAVENLI---------VVS 413
                              |::....||.              |  ||:::|:.         .::
Zfish   267 ------------------AFVSFVEMGL--------------LIDQLSIQNITGFQLIGVESWIT 299

  Fly   414 THNSIVGNNVSYSGLNNHMFNSQLRKQSAQFHGQDGF-----------------GSGYGSRISIA 461
            |.|....|  |:|.|...: ...:||.:.     :||                 ..|..|:.||:
Zfish   300 TKNYFTPN--SFSSLRGSL-GFAVRKINI-----EGFIDYVIKAFWDTAFPCTKTEGNSSQYSIS 356

  Fly   462 ATQSDSRRRRRRGVGGTSGGHLFPEAI--SQYAPQTYDAVWAIALALRAAEEHWRRNEEQSKLDG 524
            .|:|:.....:.          :.|.:  .:||...|.||:|:|.:|.:.    ...|.|...|.
Zfish   357 CTRSEDLLELKN----------YTEDVLEQRYASNVYKAVYAVAHSLHSL----LGCENQGLCDK 407

  Fly   525 FDYTRSDMAWEFLQ------QMGK-----------LHFLGVSGPVSFSGPDRVGTTAFYQI---- 568
            ....|.....|.||      |||.           .|:..|:....|.|..:..|..:|..    
Zfish   408 NKPIRPQQMVEALQKVNFTIQMGDQVWFDSTGGTVAHYEVVNWQQDFDGSFQFKTVGYYDASLPP 472

  Fly   569 -QRGLL----------------------------------EPVALY--YPA--------TDALDF 588
             ||.:|                                  .||..|  .|.        ||::: 
Zfish   473 QQRLMLNTKNIIWAGGQQKKPNSVCSESCPPGTRKAAQKGRPVCCYDCIPCAEGEISNETDSIN- 536

  Fly   589 RCPRCRPVKWHSGQVP--IAKRVFKLRVATIAP--LAFYTIATLSSVGIALAIAFLAFNLHFRK- 648
             |.:|....|.:.:..  :.|.|..|....|..  |.|:::     .|:.|..  |...|.:|| 
Zfish   537 -CKQCLEEYW
SNAEKNKCVLKAVEFLSFTEIMGIILVFFSL-----FGVVLTT--LVTVLFYRKK 593

  Fly   649 -LKAIKLSSPKLSNITAVGCIFVYATVILLGLDHSTLPSAEDSFATVCTARVYLLSAGFSLAFGS 712
             ...:|.::.:||.:    .:|..:...|..|.....|:...     |..|..:....|.|....
Zfish   594 DTPIVKANNSELSFL----LLFSLSLCFLCSLTFIGRPTEWS-----CMLRHTVFGITFVLCISC 649

  Fly   713 MFAKTYRVHRIFTRT--GSVFKDKMLQDIQLILLVGGLLLVDALLVTLWVVTDP------MERHL 769
            :..||..|...|..|  ||... |....:|..|.|....|:..::..:|:...|      ||.:.
Zfish   650 VLGKTIVVLMAFKATLPGSNVM-KWFGPVQQRLSVLAFTLIQIIICVVWITLSPPFPYKNMEYYK 713

  Fly   770 HNLTLEISATDRSVVYQPQVEVCRSQHTQTWLSVLYAYKGLLLVVGVYMAWETRHVKIP-ALNDS 833
            ..:.:|                |....|..:.:|| .|..||.|:...:|:..|  |:| ..|::
Zfish   714 EKIIIE----------------CNLGSTLGFWAVL-GYISLLSVLCFVLAFLAR--KLPDNFNEA 759

  Fly   834 QYIGVSVYSVVITSAI-VVVLANLISE--RVTLAFITITALILTSTTATLCLLFIPKLHDIWARN 895
            ::|   .:|::|..|: :..:...:|.  ::|:| :.|.| ||:|:...|..:|.||.:.|.   
Zfish   760 KFI---TFSMLIFCAVWITFIPAYVSSPGKLTVA-VEIFA-ILSSSFGLLFCIFAPKCYIIL--- 816

  Fly   896 DIIDPVIHSMGLKMECNTRRFVV 918
                       ||.|.||::.::
Zfish   817 -----------LKPEQNTKQHMM 828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_001245826.1 PBP1_GABAb_receptor 157..590 CDD:107361 100/520 (19%)
ANF_receptor 174..568 CDD:279440 91/449 (20%)
7tm_3 633..889 CDD:278433 62/269 (23%)
olfcg2NP_001103759.1 PBP1_GPCR_family_C_like 38..480 CDD:153138 94/461 (20%)
ANF_receptor 74..451 CDD:279440 87/432 (20%)
NCD3G 495..545 CDD:284890 8/51 (16%)
7tm_3 589..814 CDD:278433 59/258 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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