DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eaat2 and glt-1

DIOPT Version :9

Sequence 1:NP_001162844.1 Gene:Eaat2 / 33247 FlyBaseID:FBgn0026438 Length:579 Species:Drosophila melanogaster
Sequence 2:NP_001024393.1 Gene:glt-1 / 180641 WormBaseID:WBGene00001620 Length:503 Species:Caenorhabditis elegans


Alignment Length:502 Identity:221/502 - (44%)
Similarity:317/502 - (63%) Gaps:26/502 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LPPKTTECSDAPVELTGYRRWLSENLMLLVTLSGVLLGVILGLSLRPLNLHGDSIMLISYPGELF 89
            :||.|....:..|.      |:.:||:|::|:|.|:||.:.|..||.|.|...:||.||:||||.
 Worm     1 MPPDTRINKEIMVS------WIRKNLLLVLTVSSVVLGALCGFLLRGLQLSPQNIMYISFPGELL 59

  Fly    90 MRVLKLMILPLVISSLIAGSASLNAKMNGKIALRTLVYFASTSFFNAALGIALVLLIHPGNPDLH 154
            |.:||:|||||::||||:|.|.|:|:.:||:....:.|:..|:......||.|||:||||:|.:.
 Worm    60 MHMLKMMILPLIMSSLISGLAQLDARQSGKLGSLAVTYYMFTTAVAVVTGIFLVLVIHPGDPTIK 124

  Fly   155 NADDRSTDRRAVNLLDSLLDLGRNVFPDNLFQASIQQAHTVYLP-KPSILHVFNETMNDTLASGS 218
            ......|:.:.|:.:|:||||.||:||:|:.||:.||..|.|:. :|.::      .|:..|:.:
 Worm   125 KEIGTGTEGKTVSTVDTLLDLLRNMFPENVVQATFQQVQTKYIKVRPKVV------KNNDSATLA 183

  Fly   219 EAQRLSEDLTEDVVLVRDIQYRSGTNTLGIVFFCLVFGTFLGTIGQKGQVVVDFFAAIFEVIMKM 283
            .....|.|..:     ..::|.||.|.||::.||:..|..|..:||:..|:|.||..:.:||||:
 Worm   184 ALNNGSLDYVK-----ASVEYTSGMNVLGVIVFCIAIGISLSQLGQEAHVMVQFFVIMDKVIMKL 243

  Fly   284 VTCVMWLTPVGISSVIAGKILSVGDLGLVMSQLMWFIVTVAIGVFIYQFVVMQAIYFVVVRRNPF 348
            |..|||.:|.||..:|.||||.:.||......|..::|||..|:.|:..:.:..|:||..::||:
 Worm   244 VMTVMWYSPFGIFCLIMGKILEIHDLADTARMLAMYMVTVLSGLAIHSLISLPLIFFVTTKKNPY 308

  Fly   349 KFYAGLIQAMLTAFATASTAAALPITFRCMNEKLKVDPRITRFVLPIGCNINMDGTALYIAVASI 413
            .|..||.||.:||..|||::|.|||||.|:.|.|.||.|:||||||:|..|||||||||.|||:|
 Worm   309 VFMRGLFQAWITALGTASSSATLPITFNCLEENLGVDRRVTRFVLPVGATINMDGTALYEAVAAI 373

  Fly   414 FIAQMSGMVLGFGELLTVLLTSTAASMSSASVPSAALVLLLVVLTAIDAPVQDVTLLFAVDWFVD 478
            ||||::|:.|.||:::||.||:|.||:.:||||||.||.:|:||||:..||:||:|:.||||.:|
 Worm   374 FIAQINGVHLSFGQVVTVSLTATLASIGAASVPSAGLVTMLLVLTAVGLPVKDVSLIVAVDWLLD 438

  Fly   479 RIRTTNNMLGDCYTAAVVEELSRKELMALDAASVNYQDMPAGTPNGH 525
            ||||:.|:|||...|.:|...|:.:|.|        .|..|.|...|
 Worm   439 RIRTSINVLGDAMGAGIVYHYSKADLDA--------HDRLAATTRSH 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eaat2NP_001162844.1 SDF 51..496 CDD:278787 206/445 (46%)
glt-1NP_001024393.1 SDF 21..458 CDD:278787 207/447 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167173
Domainoid 1 1.000 392 1.000 Domainoid score I393
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 406 1.000 Inparanoid score I1074
Isobase 1 0.950 - 0 Normalized mean entropy S3077
OMA 1 1.010 - - QHG62336
OrthoDB 1 1.010 - - D1184392at2759
OrthoFinder 1 1.000 - - FOG0000144
OrthoInspector 1 1.000 - - otm14496
orthoMCL 1 0.900 - - OOG6_100309
Panther 1 1.100 - - O PTHR11958
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2500
SonicParanoid 1 1.000 - - X191
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.890

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