DRSC/TRiP Functional Genomics Resources

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Protein Alignment ds and Pcdhb15

DIOPT Version :10

Sequence 1:NP_523446.2 Gene:ds / 33245 FlyBaseID:FBgn0284247 Length:3556 Species:Drosophila melanogaster
Sequence 2:NP_001419531.1 Gene:Pcdhb15 / 108348201 RGDID:11368541 Length:800 Species:Rattus norvegicus


Alignment Length:817 Identity:211/817 - (25%)
Similarity:331/817 - (40%) Gaps:200/817 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 ILLAIVLLGSSQAASHD------QERERKLEVFEGVAVDYQIGYIGDFGGIDSGPPYIIVAEAGV 119
            :|...|.||:|.|::..      :|.||. .....:|.|..:| :|:          :...||.:
  Rat    28 VLFLYVFLGASWASAEQLQYSVAEETERG-TFLANLAKDLGLG-LGE----------LSAREARI 80

  Fly   120 ETD-----LAIDRATGEIRTKVKLDRETRASYS---------LVAIPLSGRNIRVLVTVKDENDN 170
            .:|     |.:...|||:....|||||.....:         |:..|.  :..|..:.|||.|||
  Rat    81 VSDQNTRFLLLSPLTGELILNEKLDREELCGPTEPCVLTFQLLLERPF--QIYRAALHVKDINDN 143

  Fly   171 APTFPQTSMHIEFPENTPREVKRTLLPARDLDLEPYNTQRYNIVSGNVNDAFRLSSHRERDGVLY 235
            :|.|....:|::..|:|.......|..|:|.|:...:...|.|   :.||.|.:..:...:|.::
  Rat   144 SPVFLDKEIHLKISESTTPGATFFLERAQDSDVGTNSLSNYTI---SPNDYFHIHVNDGGEGTIF 205

  Fly   236 LDLQISGFLDRETTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENAT 300
            .:|.:...||||..|.::|.:.|||||:||..|...|.|.:.|:|||.|.|.||.|....||:..
  Rat   206 PELVLDKMLDREEIPEFTLTLTALDGGSPPRSGTALVRILVLDINDNSPQFVQSLYKVQSPEDTP 270

  Fly   301 VGTSVLQVYASDTDADENGLVEYAINRRQSDKEQMFRIDPRTGAIYINKALDFETKELHELVVVA 365
            ||:.|:.|.|.|.|...||.:.|..:.......|.|:|:..:|.:|:.:.|::|..:.:.:.:.|
  Rat   271 VGSLVVAVSARDLDTGSNGQITYTFSYATERILQTFQINSTSGNLYLKRELNYEAIQTYSITIQA 335

  Fly   366 KDHGEQPLETTAFVSIRVTDVNDNQPTINVIFLSDDASPKISESAQPGEFVARISVHDPDSKTEY 430
            :|.|  .|.....|.:.|.|||||.|.    ||....:..|.|:: |...||...:.|.||.   
  Rat   336 RDGG--GLSGKCTVVVEVMDVNDNPPE----FLLSSLNSPIPENS-PEAVVAVFRIRDRDSG--- 390

  Fly   431 ANVNVTLNGG--------DGHFALTTRDNSIYLVIVHLPLDREIVSNYTLSVVATDKGTPPLHAS 487
                   |.|        |..|.|.....:.|.::...|||||..:.|.:::..:|.|||.|...
  Rat   391 -------NNGKTMCSVAHDLPFVLKPSVENFYTLVTEKPLDREAYTEYNITITVSDLGTPRLTTQ 448

  Fly   488 KSIFLRITDVNDNPPEFEQDLYHANVMEVADPGTSVLQVLAHDRDEGLNSALTYSLAETPETHAQ 552
            .:|.::::|:|||.|.|.|..|...|.|...|...:..:.|.|.|.|.|:.:||||         
  Rat   449 HTITVQVSDINDNAPTFTQTSYTMFVRENNSPALHIGTISATDSDSGSNAHITYSL--------- 504

  Fly   553 WFQIDPQTGLITTRSHIDCETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSFYN 617
                                               :||                           
  Rat   505 -----------------------------------LPP--------------------------- 507

  Fly   618 VSVAENEPVGRCILKVSASDPDCGVNAMVNYTIGEGFKHLTEFEVRSASGEICIAGELDFERRSS 682
                              .||...::::::              :.:.:|::.....||||...:
  Rat   508 ------------------HDPQLALDSLIS--------------INADNGQLFAIRALDFEDLQA 540

  Fly   683 YEFPVLATDRG--GLSTTAMIKMQLTDVNDNRP-VFYPREYKVSLRESPKASSQASSTP------ 738
            :||.|.|.|:|  .||:.|::::.:.|.|||.| |.||              .|.:|||      
  Rat   541 FEFHVGAEDQGSPALSSQALVRVVVLDDNDNAPFVLYP--------------LQNASTPCTELLP 591

  Fly   739 --------IVAVVATDPDYGNFGQVSYRIVAGNEAGIFRIDRSTGEIFVVRPDMLSVRTQPMHML 795
                    :..|||.|.|.|....:|::::...|.|:|.:....||:...|  ||..|..|.|.|
  Rat   592 RAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWSHNGEVRTTR--MLGERDVPKHKL 654

  Fly   796 NISATDGGNLRSNADAVVFLSIIDAMQRP--PIFEKA 830
            .:...|.|....:|...:.:.::|...:|  |:.|.|
  Rat   655 LLVVKDNGEPPRSASVTLHVLLVDGFSQPYLPLPEMA 691

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsNP_523446.2 CA 111..172 CDD:214520 21/74 (28%)
Cadherin_repeat 178..282 CDD:206637 32/103 (31%)
Cadherin_repeat 291..389 CDD:206637 29/97 (30%)
Cadherin_repeat 406..500 CDD:206637 28/101 (28%)
Cadherin_repeat 509..607 CDD:206637 15/97 (15%)
Cadherin_repeat 616..711 CDD:206637 18/96 (19%)
Cadherin_repeat 719..820 CDD:206637 26/114 (23%)
Cadherin_repeat 832..927 CDD:206637
Cadherin_repeat 937..1032 CDD:206637
Cadherin_repeat 1040..1149 CDD:206637
Cadherin_repeat 1158..1252 CDD:206637
Cadherin_repeat 1263..1361 CDD:206637
Cadherin_repeat 1369..1481 CDD:206637
Cadherin_repeat 1489..1598 CDD:206637
Cadherin_repeat 1614..1710 CDD:206637
Cadherin_repeat 1723..1843 CDD:206637
Cadherin_repeat 1853..1948 CDD:206637
Cadherin_repeat 1957..2053 CDD:206637
Cadherin_repeat 2061..2154 CDD:206637
CA_like 2171..>2232 CDD:481204
Cadherin_repeat 2326..2424 CDD:206637
Cadherin_repeat 2434..2528 CDD:206637
Cadherin_repeat 2549..2641 CDD:206637
Cadherin_repeat 2652..2748 CDD:206637
Cadherin_repeat 2758..2858 CDD:206637
Cadherin_repeat 2866..2960 CDD:206637
Cadherin_repeat 2985..3071 CDD:206637
Pcdhb15NP_001419531.1 Cadherin_2 44..125 CDD:462413 20/92 (22%)
Cadherin_repeat 151..252 CDD:206637 32/103 (31%)
Cadherin_repeat 261..357 CDD:206637 29/97 (30%)
Cadherin_repeat 370..461 CDD:206637 28/101 (28%)
Cadherin_repeat 469..571 CDD:206637 33/204 (16%)
Cadherin_repeat 590..678 CDD:206637 22/89 (25%)
Cadherin_C_2 701..784 CDD:465139
Blue background indicates that the domain is not in the aligned region.

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