DRSC/TRiP Functional Genomics Resources

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Protein Alignment ds and cdhr5b

DIOPT Version :9

Sequence 1:NP_001285551.1 Gene:ds / 33245 FlyBaseID:FBgn0284247 Length:3556 Species:Drosophila melanogaster
Sequence 2:XP_017209750.2 Gene:cdhr5b / 101886483 ZFINID:ZDB-GENE-110518-2 Length:722 Species:Danio rerio


Alignment Length:563 Identity:123/563 - (21%)
Similarity:216/563 - (38%) Gaps:148/563 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   618 VSVAENEPVGRCILKVSASDPDCGVNAMVN-------YTIGEGF----KHLTEFEVRSASGEICI 671
            :.:.||..:...:..::|::   ||.|::.       :.|.:.:    |.:.::|          
Zfish    37 IFIKENNTIDALVTTINAAE---GVTAVITGQNPPDLFDINDEYQLIAKTVMDYE---------- 88

  Fly   672 AGELDFERRSSYEFPVLATDRGGLSTTAMIKMQLTDVNDNRPVFYPREYKVSLRESPKASSQASS 736
                .|::.:.|...:..|..|..||:.::::.|.|:|||.|.|....|.:.::|..|.     .
Zfish    89 ----KFDKDNPYLVNIECTKPGSTSTSLLLRIVLEDINDN
PPSFKESWYSLEVKELTKV-----D 144

  Fly   737 TPIVAVVATDPDYGNFGQVSYRIVAGNEAGIFRIDRSTGEIFVVRP----DMLSVRTQPMHMLNI 797
            |.:..:.|||||..:  ::.||:  .:..|.|.::.|.....:|:.    |.:...|..::..:.
Zfish   145 TSVGLITATDPDESD--RLYYRL--ESPEGEFDVETSFNPNILVKKLLDYDKVKQVTMTLYAQDT 205

  Fly   798 SATDGGNLRSNADAVVFLSIIDAMQRPP--------IFE------KARYNYYV----KEDIPRGT 844
            .......:...|.|.|.::|||...|||        |||      .:.||..|    :|..|...
Zfish   206 QIGSSAEVSHTATATVVVNIIDIDN
RPPWFQPCTEYIFETSTVCINSGYNGVVTLKEQETDPLKL 270

  Fly   845 VVGSVIAASGDVAHRSPVRYSIYSGDPDGYFSIETNSGNIRIAKPLDHEAKSQVLLNIQATLGEP 909
            :.|.|....||...:..:.|:...|:.||.|:|.|::|||.:.||:|  .....:|.:.|     
Zfish   271 MPGPVYGIDGDAGIKELIGYTFMGGNEDGIFNINTDTGNITMLKPVD--VVGPFVLTVMA----- 328

  Fly   910 PVYGHTQVNIEVEDVNDNAPEFEASMVRISVPESAELGAPLYAAHAHDKDSGSSGQVTYSLVKES 974
                       .:.:|.:  :|..:.|.:.|..:|....|.:                   .|||
Zfish   329 -----------FQKLNPD--QFATTTVILKVALTASEFPPKF-------------------TKES 361

  Fly   975 GKGLFAIDARSGHLILSQHLDYESSQRHTLIVTATD-----GGVPSLSTNLTILVDVQDVNDNPP 1034
            .:|..:.||....|:    |:.::|.| .|.|.|||     |..|:|...   :||..|....|.
Zfish   362 YEGFISEDAGVDSLV----LEGKTSNR-ALRVQATDEDFSNGYNPNLRFE---IVDGTDFYITPE 418

  Fly  1035 VFEKDEYSVNVSESRSINAQIIQVNASDLDTGNNARITYRIV---DAGVDNVT--NSISSSDVSQ 1094
            .|        :..::::....:.:....:||.|:...|..:|   ..||...|  .:|:::|   
Zfish   419 GF--------ILMAKAVTPGTVNLEMRVIDTENDESSTASLVVEITPGVPTTTPVTTITTTD--- 472

  Fly  1095 HFGIFPNSGWIYLRAPLDRETRDRYQLTVLATDNGTPAAHAKT 1137
                                ..|..|||.: ||...|:.|..|
Zfish   473 --------------------NTDSTQLTDI-TDTSHPSTHTTT 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsNP_001285551.1 CA 111..172 CDD:214520
Cadherin_repeat 178..282 CDD:206637
Cadherin_repeat 291..389 CDD:206637
Cadherin_repeat 406..500 CDD:206637
Cadherin_repeat 509..607 CDD:206637
Cadherin_repeat 616..711 CDD:206637 18/103 (17%)
Cadherin_repeat 719..820 CDD:206637 22/104 (21%)
Cadherin_repeat 832..927 CDD:206637 25/98 (26%)
Cadherin_repeat 937..1032 CDD:206637 24/99 (24%)
Cadherin_repeat 1040..1149 CDD:206637 19/103 (18%)
Cadherin_repeat 1158..1252 CDD:206637
Cadherin_repeat 1263..1361 CDD:206637
Cadherin_repeat 1369..1481 CDD:206637
Cadherin_repeat 1489..1598 CDD:206637
Cadherin_repeat 1614..1710 CDD:206637
Cadherin_repeat 1723..1843 CDD:206637
Cadherin_repeat 1853..1948 CDD:206637
Cadherin_repeat 1957..2053 CDD:206637
Cadherin_repeat 2061..2154 CDD:206637
Cadherin_repeat 2170..2318 CDD:206637
Cadherin_repeat 2326..2424 CDD:206637
Cadherin_repeat 2434..2528 CDD:206637
Cadherin_repeat 2549..2641 CDD:206637
Cadherin_repeat 2652..2748 CDD:206637
Cadherin_repeat 2758..2858 CDD:206637
Cadherin_repeat 2866..2960 CDD:206637
Cadherin_repeat 2985..3071 CDD:206637
cdhr5bXP_017209750.2 Cadherin_repeat 36..124 CDD:206637 18/103 (17%)
Cadherin_repeat 133..230 CDD:206637 23/105 (22%)
Cadherin_repeat <278..346 CDD:206637 20/87 (23%)
Cadherin_repeat 361..454 CDD:206637 26/108 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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