DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lectin-21Cb and RGD1564571

DIOPT Version :9

Sequence 1:NP_608539.2 Gene:lectin-21Cb / 33242 FlyBaseID:FBgn0040106 Length:249 Species:Drosophila melanogaster
Sequence 2:XP_221808.5 Gene:RGD1564571 / 304197 RGDID:1564571 Length:207 Species:Rattus norvegicus


Alignment Length:162 Identity:38/162 - (23%)
Similarity:68/162 - (41%) Gaps:33/162 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 LHSKLEYLDAALQKAINSLQCSLKNTKVMSTGKPHP----EFQKLGSRYFYIERHVRQNWFDAAD 155
            :|.||:.|...|...     |           :|.|    .||  |:.||:  ...::.|.::..
  Rat    62 MHQKLDQLKTGLDHL-----C-----------RPCPWDWTFFQ--GNCYFF--STFQKKWKESVI 106

  Fly   156 KCRRMGGHLATPQD-EDELYLIRKQLEARWFWLDISNLVDKDQYISLATGKEVSYLKWRH----G 215
            .|:.||..|...:. |::.:|.|........|:.:|:..::||::.:    :.|.|:||:    |
  Rat   107 ACKDMGAQLVVIKSYEEQSFLQRTSKMKGNTWIGLSDSQEEDQWLWV----DGSPLQWRNYWSAG 167

  Fly   216 EPKKSSTANCAYLYAGDYYTYQCSDRNFFICQ 247
            ||......:|....:..:....||...|:||:
  Rat   168 EPNNLYDEDCVEFSSYGWNDISCSFEKFWICK 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lectin-21CbNP_608539.2 CLECT 137..247 CDD:153057 26/114 (23%)
RGD1564571XP_221808.5 CLECT_DC-SIGN_like 80..200 CDD:153060 31/128 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22802
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.