DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lectin-21Cb and Clec4a2

DIOPT Version :9

Sequence 1:NP_608539.2 Gene:lectin-21Cb / 33242 FlyBaseID:FBgn0040106 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_001005880.1 Gene:Clec4a2 / 297584 RGDID:1359163 Length:235 Species:Rattus norvegicus


Alignment Length:258 Identity:55/258 - (21%)
Similarity:84/258 - (32%) Gaps:84/258 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 NNCPKV---SLSERLEKRGEFSLVEFDPLLKFIVK-------------NPHKELLGEIEGLVGHT 71
            :.||.|   ..:....|.|..||: |..|:.|::.             ..:.:||.|.:.|...|
  Rat    23 SECPAVPREKPTHHPSKPGSRSLL-FTSLMVFLLLLTIAFLGSFIIYFQKYSQLLEEKKALTDKT 86

  Fly    72 ENKLQPMKSVIPNQSKALLNYLDLHSKLEYLDAALQKAINSLQCSLKNTKVMSTGKPHPEFQKLG 136
            .|.|...|:|...:.||                        ..|.||            :::..|
  Rat    87 LNDLNCTKNVSLTEDKA------------------------CSCCLK------------DWKSFG 115

  Fly   137 SRYFYIERHVRQNWFDAADKCRRMGGHLATPQDEDELYLIRKQL--------------EARWFWL 187
            |..::.....:..|.::.:||.|||.||.....:||...|...|              |.:|.|:
  Rat   116 SYCYFTSTDSKATWDESKEKCSRMGAHLLVIHSQDEQDFINTILNIGTDYFIGLSDHSENQWQWI 180

  Fly   188 DISNLVDKDQYISLATGKEVSYLKWRHGEPKKSSTANCAYLYAGDYYTYQ---CSDRNFFICQ 247
            |             .|....|...|..||| .:....|..:...|.:.:.   |.||:..:||
  Rat   181 D-------------QTPYNESVTFWHKGEP-NNKEEKCVVINHRDKWGWNDIPCHDRHKSVCQ 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lectin-21CbNP_608539.2 CLECT 137..247 CDD:153057 28/126 (22%)
Clec4a2NP_001005880.1 CLECT_DC-SIGN_like 107..229 CDD:153060 31/147 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22802
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.