DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Pax4

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_113987.1 Gene:Pax4 / 83630 RGDID:620433 Length:349 Species:Rattus norvegicus


Alignment Length:99 Identity:39/99 - (39%)
Similarity:49/99 - (49%) Gaps:19/99 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 PHHPHGHPHHPHLGAHHHGQHHLSHLGHGPPPKRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLR 370
            ||.....|..||.|..|                   |:||||:..|.|.||..|.:..|||.|:|
  Rat   155 PHSNCEAPRGPHPGTSH-------------------RNRTIFSPGQAEALEKEFQRGQYPDSVVR 200

  Fly   371 EQLALKVDLKEERVEVWFKNRRAKWRKQKREEQE 404
            .:||....|.|:.|.|||.|||||||:|::.:.|
  Rat   201 GKLAAATSLPEDTVRVWFSNRRAKWRRQEKLKWE 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 29/55 (53%)
Pax4NP_113987.1 PAX 5..129 CDD:128645
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 8..64
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 83..131
Homeodomain 172..227 CDD:459649 29/54 (54%)
Transcription repression 278..349
Blue background indicates that the domain is not in the aligned region.

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