Protein Alignment Gsc and Vsx1

DIOPT Version :10

• Sequence 1: NP_001137762.2
• Gene: Gsc / 33240
• FlyBaseID: FBgn0010323
• Length: 473
• Species: Drosophila melanogaster
• Sequence 2: NP_001103016.1
• Gene: Vsx1 / 689704
• RGDID: 1305667
• Length: 369
• Species: Rattus norvegicus
• Alignment Length: 335
• Identity: 94/335 - (28%)
• Similarity: 134/335 - (40%)
• Gaps: 71/335 - (21%)

  Fly   167 DSILGSRQQGGGTAPS---QGSHISSNGNQNGLTSNGISLGLKRSGAESPASPNSNSSSSAAASP 228
            |.:|..|.:....||.   .||.:.|      ...|.: |||: :...:||.|...|:..|.|..
  Rat     5 DGLLDGRSRSRALAPGCPPTGSRLRS------FAINDL-LGLE-ADLPTPAEPGLRSNCEAPAEA 61

  Fly   229 IRPQRVPAML----QHPGLHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAHVAAAQMQ 289
            ..|...|.:.    ....|.||   .....||.|.|           |:...|.|...:.|....
  Rat    62 TGPGPGPGLCGTCPARGALPLG---LGLLCGFGAQP-----------PSATAARARCLLLADLRL 112

  Fly   290 AHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHGQHHLSHLGHGP-----PPK--------RKR 341
            ...:|....::   ..|.||     .|.||:....::..:..|..|     .||        :||
  Rat   113 LPPAGPEPAVA---QSPVHP-----PPALGSQQRSENISTSDGDSPSEEKNDPKMSLTLGKRKKR 169

  Fly   342 RHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKRE----- 401
            ||||:||..|||:||..|.:.|||||..||.||:|.:|.|:|::|||:||||||||:::.
  Rat   170 RHRTVFTAHQLEELEKAFGEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSS 234

  Fly   402 --EQERLRKLQEEQCGSTTNGTTNSSSGTTSSTG-------NGSLTVKCPGSDHYSA---QLVHI 454
              .:..|.......|....:...||:.....|..       ..|..::.|.|:...|   :|.|:
  Rat   235 VMAEYGLYGAMVRHCIPLPDSVLNSADSLQGSCAPWLLGMHKKSTEMRKPESEEKLAGLWELDHL 299

  Fly   455 ----KSDPNG 460
                |.|.:|
  Rat   300 RKGAKKDEDG 309

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gsc	NP_001137762.2	Homeodomain	341..397	CDD:459649	35/55 (64%)
Vsx1	NP_001103016.1	Homeodomain	169..225	CDD:459649	35/55 (64%)