DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Pdlim7

DIOPT Version :9

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_001107560.1 Gene:Pdlim7 / 67399 MGIID:1914649 Length:457 Species:Mus musculus


Alignment Length:334 Identity:71/334 - (21%)
Similarity:100/334 - (29%) Gaps:126/334 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 PAGYTLKRSPSDLGEQQQPPRQISR-SPGNTAAYHLTT----AMLLNSQQCGYL----------- 114
            |.|:.|:.     |:....|..||| :||..||.....    .:.::.:..|.|           
Mouse    13 PWGFRLQG-----GKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKIRA 72

  Fly   115 -GQRLQSVLQQQHAQHQQSQSQ---TPSSDDGSQS---GVTILEEERRGGAAAASLFTIDSILGS 172
             |:||.  |....||..||:.|   ||.:|....:   ..::.:..|..||...:    ||.|  
Mouse    73 CGERLS--LGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPT----DSTL-- 129

  Fly   173 RQQG-------------------------GGTAPSQGSHISSNGNQNGLTSNGI----------- 201
            ||.|                         .||..|:...|.::     ||....           
Mouse   130 RQNGQLLRQPVPDASKQRLMEDTEDWRPRPGTGQSRSFRILAH-----LTGTEFMQDPDEEFMKK 189

  Fly   202 SLGLKRSGAESPASPNSNSSSSAAASPIRPQRVPAMLQHPGLHLGHLAAAAASGFAASPSDFLVA 266
            |..:.|:.|.:|||.....|.....:|....|.|                    :|..|     |
Mouse   190 SSQVPRTEAPAPASTIPQESWPGPTTPSPTSRPP--------------------WAVDP-----A 229

  Fly   267 YPNFY-PNYMHAAAVAHVAAAQ----------MQAHVSGAAAGLSGHGHHP--HHPH-------- 310
            :...| |:........|...|.          :||...|...|.|.:|..|  |..|        
Mouse   230 FAERYAPDKTSTVLTRHSQPATPTPLQNRTSIVQAAAGGGTGGGSNNGKTPVCHQCHKIIRGRYL 294

  Fly   311 ---GHPHHP 316
               ||.:||
Mouse   295 VALGHAYHP 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeobox 343..396 CDD:278475
Pdlim7NP_001107560.1 PDZ_signaling 5..79 CDD:238492 17/72 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 82..166 20/89 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 185..226 10/60 (17%)
LIM1_Enigma 282..333 CDD:188836 6/22 (27%)
LIM2_Enigma 341..392 CDD:188840
LIM3_Enigma 400..454 CDD:188842
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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