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Protein Alignment Gsc and pax6b
DIOPT Version :9
Sequence 1: | NP_001137762.2 |
Gene: | Gsc / 33240 |
FlyBaseID: | FBgn0010323 |
Length: | 473 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_005168876.1 |
Gene: | pax6b / 60639 |
ZFINID: | ZDB-GENE-001031-1 |
Length: | 450 |
Species: | Danio rerio |
Alignment Length: | 94 |
Identity: | 49/94 - (52%) |
Similarity: | 66/94 - (70%) |
Gaps: | 7/94 - (7%) |
- Green bases have known domain annotations that are detailed below.
Fly 338 KRK-RRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKRE 401
||| :|:||.||:||:|.||..|::||||||..||:||.|:||.|.|::|||.|||||||:
Zfish 239 KRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR---- 299
Fly 402 EQERLRKLQEEQCGSTTNGTTNSSSGTTS 430
:|:||. |..|..::::....|||..||
Zfish 300 -EEKLRN-QRRQASNSSSHIPISSSFNTS 326
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Gsc | NP_001137762.2 |
Homeobox |
343..396 |
CDD:278475 |
33/52 (63%) |
pax6b | XP_005168876.1 |
PAX |
23..160 |
CDD:128645 |
|
Homeobox |
246..298 |
CDD:306543 |
33/51 (65%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
1 |
1.030 |
- |
avgDist |
Average_Evolutionary_Distance |
R6207 |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
3 | 2.940 |
|
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