DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and PITX2

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_000316.2 Gene:PITX2 / 5308 HGNCID:9005 Length:324 Species:Homo sapiens


Alignment Length:238 Identity:73/238 - (30%)
Similarity:100/238 - (42%) Gaps:65/238 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   282 HVAAAQMQAHVSGAAAGLSGHGHHPHHPH----------GHPHHPHLGAHHHGQHHLS------- 329
            |.||....:.||.::.         |||.          |.|.......|....|.:|       
Human    12 HRAAGTKLSAVSSSSC---------HHPQPLAMASVLAPGQPRSLDSSKHRLEVHTISDTSSPEA 67

  Fly   330 ------------HLGHGPPPKRK--RRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLK 380
                        .:|...|.|:|  ||.||.||.:||::|||||.:..|||:..||::|:..:|.
Human    68 AEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLT 132

  Fly   381 EERVEVWFKNRRAKWRKQKREEQERLRK-------------LQEEQCGSTTN-----GTTNSSSG 427
            |.||.||||||||||||::|.:|..|.|             ..:...|.:.|     |.|::|..
Human   133 EARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLS 197

  Fly   428 TTSSTGNGSLTVKCPGSDHYSAQLVHIKSDPNGYSDADESSDL 470
            |.|.....|:.|     :..|:|.:.  |.||..|....||.:
Human   198 TKSFPFFNSMNV-----NPLSSQSMF--SPPNSISSMSMSSSM 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 33/55 (60%)
PITX2NP_000316.2 Homeodomain 93..149 CDD:459649 33/55 (60%)
OAR 282..299 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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