Protein Alignment Gsc and ro

DIOPT Version :10

• Sequence 1: NP_001137762.2
• Gene: Gsc / 33240
• FlyBaseID: FBgn0010323
• Length: 473
• Species: Drosophila melanogaster
• Sequence 2: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Alignment Length: 347
• Identity: 83/347 - (23%)
• Similarity: 114/347 - (32%)
• Gaps: 144/347 - (41%)

  Fly   191 GNQNGLTSNGISLGLKRSGAESPASPNSNSSSSAAASPIRPQRVPAMLQHPGLHLGHLAAAAA-- 253
            |:.:|      |.|:|||.:..|.:..:..|.        |||..:..|......|||...::
  Fly     9 GSPDG------SPGIKRSDSLDPIANTTILSV--------PQRPSSPRQFFERLYGHLETRSSEN 59

  Fly   254 ----------------------SGFAASP----SD---FLVAYP--NFYPNYMHAAAVAHVAAAQ 287
                                  .|..:||    ||   .|.|||  :||
  Fly    60 GEIDVGTHAHKPPPCDTPYHSDGGSVSSPDISISDERTSLAAYPAYDFY---------------- 108

  Fly   288 MQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHGQHHLSHLGH------GPPPK-------- 338
                           ||...:|. ||...| ..|||..||...|.|      .|||.
  Fly   109 ---------------GHAKDYPQ-HPSQQH-QQHHHHHHHPPQLVHQKLSYVSPPPAIAAGGAAN 156

  Fly   339 ---------------------------------RKRRHRTIFTEEQLEQLEATFDKTHYPDVVLR 370
                                             |:||.||.|:.||..:||..|.:..|.....|
  Fly   157 PVLPHAFPAGFPSDPHFSAGFSAFLARRRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRR 221

  Fly   371 EQLALKVDLKEERVEVWFKNRRAKWRKQKREEQERLRKLQEEQCGS---TTNGTTNSSSG---TT 429
            .:||..:.|.|.::::||:|||||        .:|:.|.|.:|...   ..||..:|..|   ||
  Fly   222 FELAETLRLTETQIKIWFQNRRAK--------DKRIEKAQIDQHYRNFVVANGFMSSIMGQAATT 278

  Fly   430 SSTG--NGSLTVKCPGSDHYSA 449
            ...|  .|.:.|.. |.::|:|
  Fly   279 MPPGGVTGGVAVGV-GLNYYAA 299

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gsc	NP_001137762.2	Homeodomain	341..397	CDD:459649	23/55 (42%)
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	20/59 (34%)