DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gsc and bap

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster


Alignment Length:426 Identity:82/426 - (19%)
Similarity:129/426 - (30%) Gaps:185/426 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 SQGSHISSNGNQNGLTS----NGISLGLKRSGAES-------------PASPNSNSSSSAAASPI 229
            |.|...:..|....||:    |.|   |.||..|:             ...|:|:...|.:.|| 
  Fly     6 SAGVSAAMAGLSKSLTTPFSINDI---LTRSNPETRRMSSVDSEPEPEKLKPSSDRERSISKSP- 66

  Fly   230 RPQRVPAMLQHPGLH-LGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAHVAAAQMQAHVS 293
                 |...:..||: |........|  |..||::|..|                          
  Fly    67 -----PLCCRDLGLYKLTQPKEIQPS--ARQPSNYLQYY-------------------------- 98

  Fly   294 GAAAGLSGHGHHPHHPHGHPHHPHLGAHHHGQHHLSHLG-------------------HGPPP-- 337
              ||.:..:.|| |...|..:.   .|..:.|..|::.|                   ..|||  
  Fly    99 --AAAMDNNNHH-HQATGTSNS---SAADYMQRKLAYFGSTLAAPLDMRRCTSNDSDCDSPPPLS 157

  Fly   338 ---------------KRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVW 387
                           .||:|.|..|:..|:.:||..|.:..|.....|.::|..:.|.|.:|::|
  Fly   158 SSPSESPLSHDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIW 222

  Fly   388 FKNRRAKWRKQKREEQER----------LRKLQEEQCGSTTNG---------------------- 420
            |:|||.|.::::.::.|.          ::.|..|. ||||..                      
  Fly   223 FQNRRYKTKRKQIQQHEAALLGASKRVPVQVLVRED-GSTTYAHMAAPGAGHGLDPALINIYRHQ 286

  Fly   421 ---------------------------------TTNSSSGTTSSTGNGSLTVKCPG--------- 443
                                             |.:||..|.||..:..:.:..||         
  Fly   287 LQLAYGGLPLPQMQMPFPYFYPQHKVPQPIPPPTQSSSFVTASSASSSPVPIPIPGAVRPQRTPC 351

  Fly   444 --------SDHYSAQLVHIKSDPNGYSDADESSDLE 471
                    |....|:.||..::     |.||:.:::
  Fly   352 PSPNGQMMSVESGAESVHSAAE-----DVDENVEID 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 19/55 (35%)
bapNP_732637.1 Homeodomain 176..232 CDD:459649 19/55 (35%)

Return to query results.
Submit another query.