Protein Alignment Gsc and abd-A

DIOPT Version :10

• Sequence 1: NP_001137762.2
• Gene: Gsc / 33240
• FlyBaseID: FBgn0010323
• Length: 473
• Species: Drosophila melanogaster
• Sequence 2: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 480
• Identity: 123/480 - (25%)
• Similarity: 179/480 - (37%)
• Gaps: 113/480 - (23%)

  Fly    16 TTTTPSTT-----PDIPPSKAKFKITVVSTPSPSPPPTPPPAGSMLAQMVETNSPP--------- 66
            |||.|:::     ..:..:.|....:|.::.|.:...:...|||..:....::|.|
  Fly    26 TTTPPNSSSAAVAAALAAAAASASASVSASSSSNNNSSNTIAGSNTSNTNNSSSSPSSSSNNNSN 90

  Fly    67 ---AGYTLKRSPSDLGEQ--QQPPRQISRSPGNTAAYHLTTAMLLNSQQCGYLGQRLQSVLQQQH 126
               :|.:|  |||.|.:.  |.|...:|.|......:.......||.|             ||||
  Fly    91 LNLSGGSL--SPSHLSQHLGQSPHSPVSSSSPFQQHHPQVQQQHLNHQ-------------QQQH 140

  Fly   127 AQHQQSQSQTPSSDDGSQSGVTILEEERR-----GGAAAAS--------LFTIDSILGSRQQGGG 178
            ..|||.|.....|   |.|....|::::.     ..||.||        |.|..| .|:.|.|..
  Fly   141 LHHQQQQHHHQYS---SLSAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTPPS-AGNSQAGDS 201

  Fly   179 T---APS-QGS---HISSNGNQNGLTSNGISLGLKRSGAESPASPNSNSSSSAAASPIRPQRVPA 236
            :   :|| .||   |.|.|.|..|..|...|.....|.|.:.|:..:.:|||.|..  ..:..|.
  Fly   202 SCSPSPSASGSSSLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAIP--TSKMYPY 264

  Fly   237 MLQHPGLHLGHLAAAAASGFA-ASPSDFLVAYPNFYPN--------------YMHAAAVAHVAAA 286
            :..||..|.|....|..:|.. .|.|.:.....|.|.:              |.||.|.|...:|
  Fly   265 VSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSA 329

  Fly   287 ----------------QMQAHVSGAAAGLSGHG--HHPHHP-------HGHPHHPHLGAHHHGQH 326
                            |..:.|...|.|..|.|  ..|.:|       .|.|....:....:|.
  Fly   330 ASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGP- 393

  Fly   327 HLSHLGHGPPPKRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNR 391
                  :|.|   :||.|..:|..|..:||..|...||.....|.::|..:.|.|.::::||:||
  Fly   394 ------NGCP---RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNR 449

  Fly   392 RAKWRKQKR---EEQERLRKLQEEQ 413
            |.|.:|:.|   |..|:.|:.:|||
  Fly   450 RMKLKKELRAVKEINEQARRDREEQ 474

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gsc	NP_001137762.2	Homeodomain	341..397	CDD:459649	20/55 (36%)
abd-A	NP_732176.1	Homeodomain	399..455	CDD:459649	20/55 (36%)
		Abdominal-A	456..478	CDD:403567	7/19 (37%)