Protein Alignment Gsc and ems

DIOPT Version :10

• Sequence 1: NP_001137762.2
• Gene: Gsc / 33240
• FlyBaseID: FBgn0010323
• Length: 473
• Species: Drosophila melanogaster
• Sequence 2: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Alignment Length: 537
• Identity: 133/537 - (24%)
• Similarity: 192/537 - (35%)
• Gaps: 153/537 - (28%)

  Fly    27 PPSKAKFKITVV-----------STPSPSPPPTPPPAGSMLAQMVETNSPPAGYTLKRSPSDLGE 80
            |..|..|.|..:           |||..|.|.:||| |..........:|||  ||...|.
  Fly    20 PKQKIGFSIESIVGNDVSTAGGNSTPDLSGPQSPPP-GERNVPGSPPQTPPA--TLTLIPG---- 77

  Fly    81 QQQPPRQISRSPGNTAAY---HLTTAMLLNSQQCGYLGQRLQSVLQQQHAQHQQSQSQTPSSDDG 142
              .||..:...|.:...|   |.....|.......:|....|.|| .||...||....||.|...
  Fly    78 --SPPHHLMAPPAHGLPYPHPHAQQQHLQAPHPHPHLSPAQQHVL-HQHLLMQQQHPGTPKSHQD 139

  Fly   143 SQSGVTILEEERRGGAAAASLFTIDSILGSRQQGGGTAPSQGSHISSNGNQNGLTSNGISLGLKR 207
            .|.    |.:.....||.||               |.:|.| :.:|....|..:   .:||..:|
  Fly   140 IQE----LLQRLHHNAAMAS---------------GLSPLQ-TRLSPETEQPQM---AVSLKRER 181

  Fly   208 S-------GAESPA-------------SPNSNSSSSAA--------ASPIRPQR--------VPA 236
            |       .||:||             ||.|:..||:.        |:|.:.|:        .||
  Fly   182 SPAPPAMEQAENPAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPA 246

  Fly   237 MLQHPG-----LHLGHLAAAAASGFAASPS------------------DFLVAYPNFYPN---YM 275
            |: |||     :..|...|.....|...|.                  .::.|.|...|.   ::
  Fly   247 MM-HPGGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHL 310

  Fly   276 HAAAVAHVAAAQMQAHVSG-AAAGLSGHGHHPHHPHGHPH----------HPHLGAHHHGQ---H 326
            .|||...:|||....||.| |||..:..|..||.....|:          :|.| ...||:   |
  Fly   311 IAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWL-LSRHGRIFPH 374

  Fly   327 HLSHLGHGPPPKRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNR 391
            ........||.::.:|.||.|:..||.:||..|:...|.....|:.||..::|.|.:|:|||:||
  Fly   375 RFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNR 439

  Fly   392 RAKWRKQKREEQERLRKLQEEQCGSTTNGTTNSSSGTTSSTGNGSLTVKCPGSDHYSAQLVHIKS 456
            |.|.::.::|:::                  ....|:..:..|||       .|....:|:.::.
  Fly   440 RTKHKRMQQEDEK------------------GGEGGSQRNMHNGS-------GDEDDDELIDMEM 479

  Fly   457 DPNGYSDADESSDLEVA 473
            |.   ..:||..:|:.:
  Fly   480 DE---CPSDEEHELDAS 493

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gsc	NP_001137762.2	Homeodomain	341..397	CDD:459649	23/55 (42%)
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	23/55 (42%)