DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gsc and toe

DIOPT Version :9

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster


Alignment Length:511 Identity:115/511 - (22%)
Similarity:160/511 - (31%) Gaps:183/511 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SPSPPPTPPPAGSMLAQMVETNSPPAGYTLKRSPSDLGEQQQPPRQISRSPG---NTAAYHLTTA 103
            |.||.||...|...::......:.||..|..                |:|||   ..||..|.:.
  Fly     4 STSPGPTRTTAAIRVSLPGAAPAIPATATAG----------------SQSPGAIMPMAAVPLPSH 52

  Fly   104 MLLNSQQCGYLGQ----------RLQSVLQQQHAQHQQSQSQTPSSDDGSQSGVTILEEERRGGA 158
            :.|.....|.:||          ...:||.|.|       |.:||:        .||.:.....|
  Fly    53 LQLLGSSAGGVGQPAAITPVSPTAATTVLAQPH-------SLSPST--------PILTQGAPPAA 102

  Fly   159 AAASLFTIDSILGSRQQGGGTAPSQGSHISSNGNQNGLTSNGISLGLKRSGAESPASPNSNSSSS 223
            |...:|.          ||..|...|:..::..|.|.|.|....|.|.|.|...........|..
  Fly   103 ALGGIFC----------GGSAAAGPGAAAAAATNLNALASQHRLLELSRFGLRGYDLAQHMLSQQ 157

  Fly   224 AAASPIRPQRVPAMLQHPGLHLGHLAAAAASGFAASPSDFLVAYPNFY----------------- 271
            .|.|     ::...|:.|||..|.....|.....:....:....|..:                 
  Fly   158 GAVS-----KLLGTLRPPGLIGGSKPKVATPTVVSKIEQYKRENPTIFAWEIRERLITEGVCTNA 217

  Fly   272 --PNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHH------------ 322
              |:......:....||: :|....|.|...|:..||.|||.:...|...|||            
  Fly   218 TAPSVSSINRILRNRAAE-RAAAEFARAASYGYAIHPTHPHPYTSFPTWPAHHPLWGAVPLATPP 281

  Fly   323 --------------------------------------HGQHHLSHLGHG--------------- 334
                                                  |...|.::.|.|               
  Fly   282 GGGPAGAGGALQPGGSGSSYGSDGNMSSNPNSSNSNTTHSNGHNTNSGSGCGDSSAGSGRLSLPA 346

  Fly   335 ---------------------------------PPPKRKRRHRTIFTEEQLEQLEATFDKTHYPD 366
                                             ..|| .||:||.|:.|||::||..|||:|||.
  Fly   347 LSPDSGSRDSRSPDADANRMIDIEGEDSESQDSDQPK-FRRNRTTFSPEQLDELEKEFDKSHYPC 410

  Fly   367 VVLREQLALKVDLKEERVEVWFKNRRAKWRKQKREEQERLRKLQEEQCGSTTNGTT 422
            |..||:||.:..|.|.||:|||.|||||||:     .:|:..:::....||::..|
  Fly   411 VNTREKLAARTALSEARVQVWFSNRRAKWRR-----HQRVNLIKQRDSPSTSSSPT 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeobox 343..396 CDD:278475 31/52 (60%)
toeNP_524041.2 HTH 134..230 CDD:304362 15/100 (15%)
Homeobox 388..440 CDD:278475 31/51 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450829
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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