DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Lmx1a

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster


Alignment Length:92 Identity:21/92 - (22%)
Similarity:33/92 - (35%) Gaps:20/92 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 LHRITSARKHELLVELKDFE-----GNYMYARYDEFAIGSEEEQYPL-----AKLGSYTGTAGDA 126
            |..||:...:..::|.|:.:     ..:..|...:.|.....|...|     ||:...:.|||: 
  Fly    58 LGEITNVNSNTAILEAKNSKQIKKGRGHGLASTSQLATSVTSEVTDLQSRTDAKVEVASNTAGN- 121

  Fly   127 LTYHKGMKFTTKDRDNDLVNSNCASNW 153
            |:..||         .|....||...|
  Fly   122 LSVSKG---------TDNTADNCIEIW 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:413332
Homeodomain 425..481 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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