Protein Alignment Gsc and CG4328

DIOPT Version :10

• Sequence 1: NP_001137762.2
• Gene: Gsc / 33240
• FlyBaseID: FBgn0010323
• Length: 473
• Species: Drosophila melanogaster
• Sequence 2: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Alignment Length: 429
• Identity: 92/429 - (21%)
• Similarity: 133/429 - (31%)
• Gaps: 159/429 - (37%)

  Fly   127 AQHQQSQSQTPSSDDGSQSGVTILEEERRGGAAAASLFTIDSILGSRQQGGGTAPSQGSHISSNG 191
            :.|..|.|.: ||...|.|.:.|.::....|....:             |.||....|....::.
  Fly    90 SNHNSSNSSS-SSSTNSSSNMAINKQPMGMGPGTGT-------------GMGTGTGHGPGPPNHT 140

  Fly   192 NQNGLTSNGISL-GLKRSGAESPASPNSNSSSS------------------AAASPIRPQ----- 232
            :.|.:|....|| |:  .|..:||:|.|.|::.                  |.|||...|
  Fly   141 HCNRITLGECSLNGM--DGFATPAAPPSASNTPQAPLGMASNSGMGMELGLAMASPQLSQCAHCC 203

  Fly   233 ---------RVPAMLQHPG--------LHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAV 280
                     ||.....|.|        |||.|...|........     |.|...|.........
  Fly   204 QPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCR-----VDYERLYIRNHCLGCG 263

  Fly   281 AHVAAAQ--MQAH------------VSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHGQHHLSHL 331
            ..:||.:  |:.|            |.||..                        ..|:.::...
  Fly   264 LKIAADELVMRCHENVFHLKCFACVVCGALL------------------------KKGEQYVVKQ 304

  Fly   332 G--------------------HGP---PPK---RK--RRHRTIFTEEQLEQLEATFDKTHYPDVV 368
            |                    :|.   |||   |:  :|.|||...:|....:|:|:.:..|...
  Fly   305 GQLFCRFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRK 369

  Fly   369 LREQLALKVDLKEERVEVWFKNRRAKWRK-QKREEQERLRKLQEEQCGSTTNGTTNSSSGTTSST 432
            :||.||....|....|:|||:|:|||.:| ||:.:||           ..:.|.::|.....|.
  Fly   370 VRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQE-----------PPSKGASDSQDSQESL- 422

  Fly   433 GNGSLTVKCPGSDHYSAQLVHIKSDPNGYSDADESSDLE 471
             :.||..|.....|                 :|..|.||
  Fly   423 -DSSLATKIKDEAH-----------------SDSESQLE 443

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gsc	NP_001137762.2	Homeodomain	341..397	CDD:459649	21/55 (38%)
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	10/56 (18%)
		LIM	259..313	CDD:413332	9/77 (12%)
		COG5576	<332..439	CDD:227863	38/136 (28%)
		HOX	341..393	CDD:197696	18/51 (35%)