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Protein Alignment Gsc and gsb-n
DIOPT Version :9
Sequence 1: | NP_001137762.2 |
Gene: | Gsc / 33240 |
FlyBaseID: | FBgn0010323 |
Length: | 473 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_523862.1 |
Gene: | gsb-n / 38004 |
FlyBaseID: | FBgn0001147 |
Length: | 449 |
Species: | Drosophila melanogaster |
Alignment Length: | 159 |
Identity: | 59/159 - (37%) |
Similarity: | 69/159 - (43%) |
Gaps: | 34/159 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 334 GPPPKRK-RRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRK 397
|.|.||| ||.||.||.||||.||..|.:|.||||..||:||....|.|.|::|||.||||:.||
Fly 175 GIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRK 239
Fly 398 QKREEQERLRKLQEEQCGSTTNGTTNSSSGTTSSTGNGSLTV-------KCPG------------ 443
........|..:.. ||:..|.....||.|:..|.|.|.| ..||
Fly 240 HSGGSNSGLSPMNS---GSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDGV 301
Fly 444 -------SDHYS----AQLVHIKSDPNGY 461
|.|:| |...|..:...||
Fly 302 HHAAHAPSSHHSAATAAAAAHHHTQMGGY 330
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Gsc | NP_001137762.2 |
Homeobox |
343..396 |
CDD:278475 |
30/52 (58%) |
gsb-n | NP_523862.1 |
PAX |
20..141 |
CDD:278709 |
|
Homeobox |
185..238 |
CDD:278475 |
30/52 (58%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
1 |
0.930 |
- |
- |
|
C45450995 |
Domainoid |
1 |
1.000 |
55 |
1.000 |
Domainoid score |
I4097 |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000011 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
|
4 | 3.840 |
|
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