DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and gsb-n

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster


Alignment Length:159 Identity:59/159 - (37%)
Similarity:69/159 - (43%) Gaps:34/159 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   334 GPPPKRK-RRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRK 397
            |.|.||| ||.||.||.||||.||..|.:|.||||..||:||....|.|.|::|||.||||:.||
  Fly   175 GIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRK 239

  Fly   398 QKREEQERLRKLQEEQCGSTTNGTTNSSSGTTSSTGNGSLTV-------KCPG------------ 443
            ........|..:..   ||:..|.....||.|:..|.|.|.|       ..||            
  Fly   240 HSGGSNSGLSPMNS---GSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDGV 301

  Fly   444 -------SDHYS----AQLVHIKSDPNGY 461
                   |.|:|    |...|..:...||
  Fly   302 HHAAHAPSSHHSAATAAAAAHHHTQMGGY 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 32/55 (58%)
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 32/55 (58%)
Blue background indicates that the domain is not in the aligned region.

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