DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Rhox12

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_001020072.1 Gene:Rhox12 / 363437 RGDID:1563789 Length:175 Species:Rattus norvegicus


Alignment Length:108 Identity:38/108 - (35%)
Similarity:53/108 - (49%) Gaps:19/108 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 HLGAHHHGQHHLSHLGHGP--------------PPKRKRRHRTI--FTEEQLEQLEATFDKTHYP 365
            ::|.....::..||.|.|.              |..|:.|.|..  .|..||.:||..|:.|.||
  Rat    65 YIGNDVKDEYRGSHQGSGDSQLEEQKNLASPTIPQFRRTRPRIQLGLTPRQLSELEDFFETTKYP 129

  Fly   366 DVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKREEQERLRK 408
            ||:.|..||..:.|.|.||:.|||.|||::||   |:|.::.|
  Rat   130 DVITRRNLAKHLYLAESRVKRWFKRRRARYRK---EQQTQMLK 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 26/57 (46%)
Rhox12NP_001020072.1 homeodomain 101..163 CDD:238039 29/64 (45%)

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