DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Arx

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_001093644.1 Gene:Arx / 317268 RGDID:1562672 Length:566 Species:Rattus norvegicus


Alignment Length:458 Identity:114/458 - (24%)
Similarity:155/458 - (33%) Gaps:158/458 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LSSLWTPGGG------------------GGGTTTTTPSTTPDIPPSKAKFKITVVSTPSPSPPPT 48
            |..|:.||||                  ...|.|.|.....::||              |.||..
  Rat    85 LRRLYGPGGGRLLQGAAAAAAAAAAAAAAAATATGTAGPRGEVPP--------------PPPPAA 135

  Fly    49 PPPAGSMLAQMVETNSPPAGYTLKRSPSDLGEQQQPPRQISRSPGNTAAYHLTTAMLLNSQQCGY 113
            .|......|..|...:..|..|||.|       |.|...||||    .:|....|..:       
  Rat   136 RPGERQDSAGAVAAAAAAAWDTLKIS-------QAPQVSISRS----KSYRENGAPFV------- 182

  Fly   114 LGQRLQSVLQQQHAQHQQSQSQTPSSDD-GSQSGVTILEEERRGGAAAASLFTIDSILGSRQQGG 177
                                ...|:.|: |...||...||.    .:|||             |.
  Rat   183 --------------------PPPPALDELGGPGGVAHPEER----LSAAS-------------GP 210

  Fly   178 GTAPSQGSHISSNGNQNGLTSNGISLGLKRSGAESPASPNSNSSSSAAASPIRPQRVPAMLQHPG 242
            |:||:.|....:..::..|..:       ....:.......:..........|     |:|:.| 
  Rat   211 GSAPAAGGGTGTEEDEEELLED-------EEDEDEEEELLEDDEEELLEDDAR-----ALLKEP- 262

  Fly   243 LHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGH--- 304
                ...:.|.:|..|:                 |||.|..|||     |:.....||....   
  Rat   263 ----RRCSVATTGTVAA-----------------AAAAAAAAAA-----VATEGGELSPKEELLL 301

  Fly   305 HPHHPHGHPHHPHLGAHHHGQHHL-----SHLGHGPPPKRKRRHRTIFTEEQLEQLEATFDKTHY 364
            ||....|          ..|:..:     |....|...:::||:||.||..|||:||..|.||||
  Rat   302 HPEDAEG----------KDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHY 356

  Fly   365 PDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKREEQERLRKLQEEQCGSTTNGTTNSSSGTT 429
            |||..||:||:::||.|.||:|||:||||||||:             |:.|:.|:.......|..
  Rat   357 PDVFTREELAMRLDLTEARVQVWFQNRRAKWRKR-------------EKAGAQTHPPGLPFPGPL 408

  Fly   430 SST 432
            |:|
  Rat   409 SAT 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 37/55 (67%)
ArxNP_001093644.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..79
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..264 42/230 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..319 7/42 (17%)
Homeodomain 333..389 CDD:459649 37/55 (67%)
OAR 530..548 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 534..547
Blue background indicates that the domain is not in the aligned region.

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