Protein Alignment Gsc and Vsx1

DIOPT Version :10

• Sequence 1: NP_001137762.2
• Gene: Gsc / 33240
• FlyBaseID: FBgn0010323
• Length: 473
• Species: Drosophila melanogaster
• Sequence 2: NP_572232.2
• Gene: Vsx1 / 31470
• FlyBaseID: FBgn0263511
• Length: 837
• Species: Drosophila melanogaster
• Alignment Length: 608
• Identity: 152/608 - (25%)
• Similarity: 197/608 - (32%)
• Gaps: 271/608 - (44%)

  Fly    15 TTTTTPSTTPDIPPSKAKFKITVVSTPSPSPPPTPPPAGSMLAQMVETNSPPAGYTLKRSPSDLG 79
            |.:.|||..|                  |||..||||          |.:.||..:|........
  Fly    26 TASATPSEAP------------------PSPAATPPP----------TANTPANGSLSAVQQQQQ 62

  Fly    80 EQQQPPRQ------------------------ISR------------------------------ 90
            :|||..:|                        :||
  Fly    63 QQQQQQQQQQQLQQQQQQAIDSLRESRSISPDVSRLSAAAAAAAAAAAHCQLPVFNPANFYAAAG 127

  Fly    91 -----SPGNTAA---YHLTT---AMLLN-------------------------SQQCGYLGQRLQ 119
                 .|||.||   :|:||   |..|.                         ::|....||...
  Fly   128 YAAAADPGNAAAAHHHHMTTLAAAAYLRGFLPPGFSTPHEFRGHFQQHFGAQFAEQAAARGQEYA 192

  Fly   120 SVLQQQHAQHQQSQSQTPSSDDGSQSGVTILEEERRGGAAAASLFTIDSILGSRQQGGGTAPSQG 184
            |.|.......|.....:.||.:|..           ||:.:.|             |||...|.|
  Fly   193 SSLANASGDEQSPSKNSSSSGNGGS-----------GGSGSGS-------------GGGNPTSNG 233

  Fly   185 -SHISSNGNQNGLTSNGISLGLKRSGAESPASPNSNSSSSAAASPIRPQRVPAMLQHPGLHLGHL 248
             .|:.|....||.:..|..:|  .||..|..| .||||:|                      |:.
  Fly   234 LGHLGSPTASNGGSGGGAGVG--GSGGGSGTS-GSNSSTS----------------------GNG 273

  Fly   249 AAAAASGFAASPSDFLVAYPNFYPNYMHAAAVA---HVAAAQMQAHVSGAAAGLSGHGHHPH--- 307
            ....:||..:||     |.|:      |:||:|   |.|||...||...|||..:.|.||.|
  Fly   274 GNGGSSGSRSSP-----AGPH------HSAALAAHQHAAAAAAAAHHHAAAAAAAHHAHHAHAQA 327

  Fly   308 HPHGHPH-HPHL-----GAHHHGQHHLSHLG---------------H-------------GPPPK 338
            |.|.|.| |.|.     .||.|..|..:.||               |             |...|
  Fly   328 HAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNSLLAAHGGDVLVGPGGTGPGGKKK 392

  Fly   339 RKRRH-RTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRK----- 397
            .|||| |||||..|||:||..|.:.|||||..||.|::|..|.|:|::||::||||||||
  Fly   393 NKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEKCW 457

  Fly   398 --------------------------------------------QKREEQERLRKLQEEQCGSTT 418
                                                        :|..|...|.|..|....:.|
  Fly   458 GHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDESDRETPT 522

  Fly   419 NGTTNS--SSGTTSSTGNGSLTV 439
            :..||:  |:|:|.::...|.::
  Fly   523 SDDTNTSYSAGSTHNSPISSFSI 545

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gsc	NP_001137762.2	Homeodomain	341..397	CDD:459649	34/56 (61%)
Vsx1	NP_572232.2	Homeodomain	395..452	CDD:459649	34/56 (61%)