DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and vsx1

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_571408.1 Gene:vsx1 / 30598 ZFINID:ZDB-GENE-990415-205 Length:344 Species:Danio rerio


Alignment Length:337 Identity:99/337 - (29%)
Similarity:136/337 - (40%) Gaps:86/337 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 PSQGSHISSNGNQNGLTSNGIS----LGLK------RSGAESPASPNSNSSSSAAASPIRPQRVP 235
            ||.|.. .|..|.:|..|.|.:    |||:      :||  ..|.||....|:|...        
Zfish    18 PSFGID-KSRLNGSGFRSKGFAITDLLGLESELQPHQSG--PGAGPNGEGQSAAVGG-------- 71

  Fly   236 AMLQHPG----LHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAA 296
              ...||    |.||.|.:.||.....:|. ||   |:..|..........:...:.|..|....
Zfish    72 --FSFPGGSLPLGLGFLCSLAAQQPPGAPC-FL---PSHIPLLQSRTESHFMQNLEQQRDVYSDD 130

  Fly   297 AGLSGHGHHPHHPHGHPHHPHLGAHHHGQHHLSHLGHGPPPKR-KRRHRTIFTEEQLEQLEATFD 360
            ..|||.                  .:.|::      .|...|| ||||||:||..|||:||..|:
Zfish   131 DCLSGD------------------RNDGKN------SGNSQKRKKRRHRTVFTSHQLEELEKAFN 171

  Fly   361 KTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKR---------------EEQERLRKLQ 410
            :.|||||..||.||:|.:|.|:|::|||:||||||||:::               ........|.
Zfish   172 EAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLP 236

  Fly   411 EEQCGSTTNGTTNSSS----GTTSSTGNGSLTV--KCPG------SDHYSAQLVHIKSD---PNG 460
            |....|..:|...|.:    |..:.....|:.:  |.||      ||.||.:.....||   .:|
Zfish   237 ESIINSAKSGMMGSCAPWLLGEPAGMHKKSMEIVKKAPGTPESTHSDTYSEEHKGKDSDTTWSSG 301

  Fly   461 YSDADESSDLEV 472
            .:.||:|.|:.:
Zfish   302 ANGADDSEDMAI 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 35/55 (64%)
vsx1NP_571408.1 Octapeptide motif 37..44 0/6 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 49..70 7/22 (32%)
COG5576 101..>221 CDD:227863 50/146 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..156 11/52 (21%)
Nuclear localization signal. /evidence=ECO:0000269|PubMed:11331779 147..151 2/3 (67%)
Homeodomain 152..208 CDD:459649 35/55 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 273..344 13/41 (32%)

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