DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and rx1

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_571300.2 Gene:rx1 / 30472 ZFINID:ZDB-GENE-990415-236 Length:330 Species:Danio rerio


Alignment Length:186 Identity:63/186 - (33%)
Similarity:89/186 - (47%) Gaps:35/186 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 AAAAASGFAASPSDFLVAYPNFYPNYMH--AAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHG 311
            |..|..|......|.::.:.....:.::  |.||||        .|.|.:.|..|.......|:|
Zfish    27 AGGAVVGTRVHSIDVILGFNKDQDSLLNPGANAVAH--------KVGGESLGEPGKLDQRVQPYG 83

  Fly   312 HPHHPHLGAHH---HGQHHLSH-----LG----------------HGPPPKRK-RRHRTIFTEEQ 351
            |......|:..   |.....|:     ||                .|..||:| ||:||.||..|
Zfish    84 HLPPLRDGSEQPTFHDADMFSNKCDGDLGDLRKAIESDSKSPDSADGEQPKKKHRRNRTTFTTYQ 148

  Fly   352 LEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKREEQERLR 407
            |.:||..|:|:|||||..||:||:||:|.|.||:|||:|||||||:|::.:...::
Zfish   149 LHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKIDASTMK 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 36/55 (65%)
rx1NP_571300.2 Octapeptide motif 37..44 1/6 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 66..104 8/37 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 118..142 6/23 (26%)
Homeodomain 138..194 CDD:459649 36/55 (65%)
OAR 302..318 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 306..319
Nuclear localization signal. /evidence=ECO:0000255 312..316
Blue background indicates that the domain is not in the aligned region.

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