DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Pitx3

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:XP_006526827.1 Gene:Pitx3 / 18742 MGIID:1100498 Length:388 Species:Mus musculus


Alignment Length:217 Identity:72/217 - (33%)
Similarity:91/217 - (41%) Gaps:57/217 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 ISLGLKRSGAESPAS---PNSNSSSSAAASPIRPQRVPAMLQHPGLHLGHLAAAAASGFAASPSD 262
            :|||.....:....|   |.....|:.....|:.||.|:|      ..|.|..|.|...|.|.||
Mouse    48 LSLGAHSLNSACHCSGCYPLPGPPSTEIEDEIKRQRPPSM------EFGLLGEAEARSPALSLSD 106

  Fly   263 FLVAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHGQHH 327
                                              ||.      ||.|  .|.|...|..|.....
Mouse   107 ----------------------------------AGT------PHPP--LPEHGCKGQEHSDSEK 129

  Fly   328 LS-HLGHGPP-----PKRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEV 386
            .| .|..|.|     .|::||.||.||.:||::|||||.:..|||:..||::|:..:|.|.||.|
Mouse   130 ASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRV 194

  Fly   387 WFKNRRAKWRKQKREEQERLRK 408
            |||||||||||::|.:|..|.|
Mouse   195 WFKNRRAKWRKRERSQQAELCK 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 33/55 (60%)
Pitx3XP_006526827.1 Homeodomain 149..205 CDD:459649 33/55 (60%)
PTZ00395 <228..>322 CDD:185594
OAR 344..361 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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