DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Lhx6

DIOPT Version :9

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_032526.2 Gene:Lhx6 / 16874 MGIID:1306803 Length:392 Species:Mus musculus


Alignment Length:155 Identity:41/155 - (26%)
Similarity:62/155 - (40%) Gaps:52/155 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   337 PKRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKRE 401
            ||..:|.||.||.|||:.::|.|.:.:.||....::||....|....::|||:|.||:.:|...:
Mouse   245 PKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQ 309

  Fly   402 ---------------------------EQERLRKLQEEQCGSTTNGTTNSSSGTTSSTGNGSLTV 439
                                       ..||.|.:       |.:|...|.             |
Mouse   310 HPVPPSGAPPTRLPSALSDDIHYSPFSSPERARMV-------TLHGYIESQ-------------V 354

  Fly   440 KCPGSDH----YSAQLVHIKSDPNG 460
            :| |..|    |:|..||:|:|.:|
Mouse   355 QC-GQVHCRLPYTAPPVHLKADLDG 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeobox 343..396 CDD:278475 20/52 (38%)
Lhx6NP_032526.2 LIM1_Lhx6 99..152 CDD:188766
LIM2_Lhx6 160..214 CDD:188768
Homeobox 252..304 CDD:278475 20/51 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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