DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gsc and LOC1281689

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:XP_321639.6 Gene:LOC1281689 / 1281689 VectorBaseID:AGAMI1_013275 Length:436 Species:Anopheles gambiae


Alignment Length:419 Identity:91/419 - (21%)
Similarity:136/419 - (32%) Gaps:182/419 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 SILGSRQQGGGTAPSQGSHISSNGNQNGLTSNGISLGLKRSGAESPASPNSNSSSSAAASPIRPQ 232
            |:.|: ..|..|..::||        :.:..|..::|.:..      ..:.|.::.:....:.|.
Mosquito     8 SVTGT-NYGDSTVAARGS--------SCILENAAAVGAQTE------QYHDNKATGSVWYNVVPP 57

  Fly   233 RVPAMLQHPGLHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAA 297
            .....:.:..|.||  .:||:.|                    ..:.|...:.:.:...:|...:
Mosquito    58 PTGCPVPNDALPLG--GSAASDG--------------------GTSGVIEPSCSNVSPSISSDPS 100

  Fly   298 G-----------LSGHGHHPHHPHGHPHHPHLGAHHH---------GQHH--------------- 327
            |           .:||.||.||.|.|.|..|  .|||         |:|.               
Mosquito   101 GRYYDEAGELSITTGHPHHHHHHHTHTHQHH--THHHQFSNNRLLMGEHRSPLIYEGSNVELGFG 163

  Fly   328 ------------LSHLG------------HG----------------------------PPP--- 337
                        |::.|            ||                            ||.   
Mosquito   164 GLNIEGESGTSGLTNPGAAAATSVDKKVHHGGVKDRFLMSNLLQLNSTSSTADSSRTMMPPGSPS 228

  Fly   338 ---------------------------KRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLAL 375
                                       |:.||:||.||..||..||..|:||||||..:||:||.
Mosquito   229 SPVDKDDLEDTPTHKSDLSMRTKSCTLKKPRRNRTTFTTNQLTALEKIFEKTHYPDAFVREELAN 293

  Fly   376 KVDLKEERVEVWFKNRRAKWRKQKREEQERLRKLQEEQCGSTTNGTTNSSSG---------TTSS 431
            ||.|.|.||:|||:|||||:|:.:|..|             ::.|..::|.|         ..|:
Mosquito   294 KVGLSEARVQVWFQNRRAKFRRNERSAQ-------------SSGGGGSASKGEDFFHPGAIPPSA 345

  Fly   432 TGNG----SLTVKCPGSDHYSAQLVHIKS 456
            |..|    :..|..|.|..||.....:.|
Mosquito   346 TSGGLAGFAGVVDKPDSGPYSLSFSTLSS 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 35/55 (64%)
LOC1281689XP_321639.6 None

Return to query results.
Submit another query.