DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Alx3

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_031467.1 Gene:Alx3 / 11694 MGIID:1277097 Length:343 Species:Mus musculus


Alignment Length:251 Identity:87/251 - (34%)
Similarity:107/251 - (42%) Gaps:54/251 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 PASPNS-NSSSSAAASPIRPQRVPAMLQHPGLHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMH 276
            ||.|.. ..|...|..|:.|. :|...:.|..:|..|          .|...|.. .:||.....
Mouse    40 PAPPRGPRLSRFPACGPLEPY-LPEPAKPPAKYLQDL----------GPGPVLNG-GHFYEGSAE 92

  Fly   277 AAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHGQHHLS-HLGHGPP---- 336
            |...|..||:..|..|........|    |.:....| .|.|.:       || .|..|.|    
Mouse    93 AEEKASKAASFPQLPVDCRGGPRDG----PSNVQASP-GPCLAS-------LSVPLSPGLPDSME 145

  Fly   337 ----PKRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRK 397
                ..:|||:||.|:..|||:||..|.|||||||..||||||:.||.|.||:|||:||||||||
Mouse   146 LAKTKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRK 210

  Fly   398 QKREEQERLRKLQEEQCGSTTNGTTNSSSGTTS----------STGNGSLTVKCPG 443
                 :||..|:||.:...||....:....|.|          |.|:||     ||
Mouse   211 -----RERYGKMQEGRNPFTTAYDISVLPRTDSHPQLQNSLWPSPGSGS-----PG 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 38/55 (69%)
Alx3NP_031467.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..122 23/97 (24%)
Homeodomain 154..210 CDD:459649 38/55 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..343
Blue background indicates that the domain is not in the aligned region.

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