DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Prrx2

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_001402085.1 Gene:Prrx2 / 113931 RGDID:1311471 Length:248 Species:Rattus norvegicus


Alignment Length:188 Identity:69/188 - (36%)
Similarity:89/188 - (47%) Gaps:40/188 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 SSAAASPIRPQRVPAMLQHPGLHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAHVAAA 286
            |:|||..:.|   ||    ||           .|...:|.|...|..||  :..|...:..||||
  Rat     3 SAAAAFALDP---PA----PG-----------PGPPPAPGDCAQARKNF--SVSHLLDLEEVAAA 47

  Fly   287 QMQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLG------AHHHGQHHLSHLGHGPPPKRK---RR 342
            ..:|  :|...|       |....|....|..|      |...|.  ....|||...|||   ||
  Rat    48 GRRA--AGPVPG-------PEAREGAAREPSGGSSGSEAAPQDGD--CPSPGHGSATKRKKKQRR 101

  Fly   343 HRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKR 400
            :||.|...||:.||..|::|||||..:||:||.:|:|.|.||:|||:|||||:|:.:|
  Rat   102 NRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNER 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 32/55 (58%)
Prrx2NP_001402085.1 Homeodomain 104..156 CDD:459649 29/51 (57%)
COG5576 <110..214 CDD:227863 29/50 (58%)
OAR 222..238 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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